Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d04f
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 194 3e-50
AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical ... 72 4e-13
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 31 0.92
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 30 1.6
U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized mu... 29 3.7
AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L) prot... 29 3.7
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 28 4.9
Z50741-4|CAO82050.1| 190|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 194 bits (474), Expect = 3e-50
Identities = 94/161 (58%), Positives = 111/161 (68%), Gaps = 3/161 (1%)
Frame = +2
Query: 128 RMSSHFIYYPDKERPV---DGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVAFGGVFR 298
R +HF + P P + E TKMN+MQ++N AM I ++ + +AVLFGEDVAFGGVFR
Sbjct: 20 RGKAHFTFQPSTTLPAGLENLEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVAFGGVFR 79
Query: 299 CALGLQEKYGKDRVFNTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAA 478
C+L LQ+K+GKDRVFNTPLCEQ EIQF DYIFPA+DQ+VNEAA
Sbjct: 80 CSLDLQKKFGKDRVFNTPLCEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAA 139
Query: 479 KARYRSGGEYDSGALTVRAPCSAVGHGGLYHSQSPEAFFAH 601
K RYRSG ++D G LTVR AVGHG LYHSQSPEA F H
Sbjct: 140 KFRYRSGNQFDCGKLTVRTTWGAVGHGALYHSQSPEANFTH 180
>AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical
protein C04C3.3 protein.
Length = 352
Score = 71.7 bits (168), Expect = 4e-13
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +2
Query: 194 MNMMQAINNAMDITLKNNPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXX 370
M + A+N AMD +K + L GE+VA + G ++ + GL +K+G RV +TP+ E
Sbjct: 25 MTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGF 84
Query: 371 XXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAV 550
E ++ A DQI+N AAK Y S G + R P A
Sbjct: 85 AGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPV-PIVFRGPNGAA 143
Query: 551 GHGGLYHSQSPEAFFAH 601
HSQ A++AH
Sbjct: 144 AGVAAQHSQDFSAWYAH 160
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 449 AFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVG 553
A+D +V++ KA YR+GG +S + APCS +G
Sbjct: 151 AYDLVVDQIHKAAYRNGGLGNS----IYAPCSKIG 181
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 529 PRALQCGRARRTLPLPESGGLLCTCPRSPGG 621
P+ + GRARR LP+ L CP P G
Sbjct: 64 PKEMLLGRARRQAALPDCQALAKNCPPGPPG 94
>U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized
muscle protein 1,isoform a protein.
Length = 640
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 110 VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNNPTAVL 262
+NN+ K S YP P+ GE T + + N ++ ++ PT +
Sbjct: 25 INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75
>AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L)
protein.
Length = 640
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 110 VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNNPTAVL 262
+NN+ K S YP P+ GE T + + N ++ ++ PT +
Sbjct: 25 INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 71 STKSIVFHKLIRNVNNYAKRMSSHFIYYPDK-ERPVDG 181
S S+++++L+R K++ F YYP++ E+ +DG
Sbjct: 141 SYDSLLYNELLRLSTGIPKQLKISFFYYPERTEKVLDG 178
>Z50741-4|CAO82050.1| 190|Caenorhabditis elegans Hypothetical
protein F55G7.4 protein.
Length = 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 125 KRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLK 241
+R+ +H++ YP D + TK++ ++ N+A D++LK
Sbjct: 53 ERLINHYVSYPSPVHGSDVDETKVD-LKIKNHAFDLSLK 90
>Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 107 NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 262
NVNN A +SH I+Y D P K M+ INNA D L + T +L
Sbjct: 602 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 657
>Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 107 NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 262
NVNN A +SH I+Y D P K M+ INNA D L + T +L
Sbjct: 599 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 654
>Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 107 NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 262
NVNN A +SH I+Y D P K M+ INNA D L + T +L
Sbjct: 602 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 657
>Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 107 NVNNYAKRMSSHFIYY---PDKERPVDGETTK-MNMMQAINNAMDITLKNNPTAVL 262
NVNN A +SH I+Y D P K M+ INNA D L + T +L
Sbjct: 599 NVNNIAGIYNSHLIHYYSLTDARLPALALLVKHWAMVTGINNAQDGFLNSYTTILL 654
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,151
Number of Sequences: 27780
Number of extensions: 302084
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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