Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d03r
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 273 9e-74
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 273 1e-73
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 270 6e-73
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 269 2e-72
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 264 5e-71
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 160 1e-39
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 160 1e-39
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 29 3.1
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 7.2
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 28 7.2
03_03_0278 - 16126803-16129049 28 7.2
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 28 9.6
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 273 bits (670), Expect = 9e-74
Identities = 129/186 (69%), Positives = 153/186 (82%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
++SNASCTTNCLAPLAKVIHDNF I+EGLM VDGPS K WR GR A N
Sbjct: 171 IVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFN 230
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIP+STGAAKAVGKV+P LNGKLTGM+FRV +VSVVDLTVR+ K ASY+AIK +K A
Sbjct: 231 IIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSA 290
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNFVKL++WYDNE+GYS+RVI
Sbjct: 291 SEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVI 350
Query: 234 DLIKYI 217
DLI+++
Sbjct: 351 DLIRHM 356
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 273 bits (669), Expect = 1e-73
Identities = 132/186 (70%), Positives = 152/186 (81%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
++SNASCTTNCLAPLAKVI+D F IVEGLM VDGPS K WR GR A N
Sbjct: 196 IVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFN 255
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIP+STGAAKAVGKV+PALNGKLTGMAFRV +VSVVDLTVRL KPASY+ IK +KE
Sbjct: 256 IIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEE 315
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
+EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNFVKL+SWYDNE+GYSSRV+
Sbjct: 316 SEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVV 375
Query: 234 DLIKYI 217
DLI+++
Sbjct: 376 DLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 270 bits (663), Expect = 6e-73
Identities = 133/188 (70%), Positives = 152/188 (80%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
++SNASCTTNCLAPLAKVI+D F IVEGLM VDGPS K WR GR A N
Sbjct: 167 IVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSMKDWRGGRAASFN 226
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIP+STGAAKAVGKV+PALNGKLTGMAFRV +VSVVDLTVRL KPASY+ IK +KE
Sbjct: 227 IIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEE 286
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+D FVKL+SWYDNE+GYS+RVI
Sbjct: 287 AEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVI 346
Query: 234 DLIKYIQS 211
DLI+++ S
Sbjct: 347 DLIRHMHS 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 269 bits (659), Expect = 2e-72
Identities = 129/186 (69%), Positives = 151/186 (81%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
V+SNASCTTNCLAPLAK++H+ F I EGLM VDGPS K WR GRGA QN
Sbjct: 223 VVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQN 282
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIP+STGAAKAVGKV+PALNGKLTGMAFRV NVSVVDLT RL K ASYE +K +KEA
Sbjct: 283 IIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKEA 342
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+
Sbjct: 343 SEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVL 402
Query: 234 DLIKYI 217
DLI ++
Sbjct: 403 DLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 264 bits (647), Expect = 5e-71
Identities = 126/186 (67%), Positives = 150/186 (80%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
V+SNASCTTNCLAPLAKV+H+ F IVEGLM VDGPS K WR GRGA QN
Sbjct: 282 VVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQN 341
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIP+STGAAKAVGKV+P LNGKLTGMAFRV NVSVVDLT R+ K ASY+ +K +K A
Sbjct: 342 IIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAAIKAA 401
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+
Sbjct: 402 SEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVL 461
Query: 234 DLIKYI 217
DLI ++
Sbjct: 462 DLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 160 bits (389), Expect = 1e-39
Identities = 84/189 (44%), Positives = 112/189 (59%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAP K++ F I++G M +D L R R A N
Sbjct: 213 IISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALN 271
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
I+P STGAAKAV V+P L GKL G+A RV NVSVVDL V++ K E + Q +++
Sbjct: 272 IVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDS 331
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A LKGIL + +VS DF S DA+ + + D+ VK+I+WYDNE+GYS RV+
Sbjct: 332 AANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGYSQRVV 391
Query: 234 DLIKYIQSK 208
DL + ++
Sbjct: 392 DLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 160 bits (389), Expect = 1e-39
Identities = 86/190 (45%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAP K++ + F IV+G M +D L R R A N
Sbjct: 225 IISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALN 283
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPA-SYEAIKQKVKE 418
I+P STGAAKAV V+P L GKL G+A RV NVSVVDL + K + + + ++
Sbjct: 284 IVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITADDVNAAFRK 343
Query: 417 AAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRV 238
AA GPL GIL + +VS DF SS DA+ + + D+ VK+++WYDNE+GYS RV
Sbjct: 344 AAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRV 403
Query: 237 IDLIKYIQSK 208
+DL + SK
Sbjct: 404 VDLAHLVASK 413
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 603 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKV 424
QQ A+TG K V P +NG +GM ++ + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 423 KEAAEGPL-KGI 391
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 257 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 355
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 588 PASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSV 484
PA+ G ++G + P +NGKL+ +L +SV
Sbjct: 57 PAAYGELMSIGGIGPGVNGKLSAALAEILETKLSV 91
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 772 HLKCFLHHKLSCPTCK 725
+LK +L+H L CPTC+
Sbjct: 220 YLKVYLNHNLLCPTCR 235
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 694 LNNFKVIMNNLCKWGKTVCGARSI*DDL 777
LN +++L + G T CGARSI DD+
Sbjct: 426 LNENATGVHDLYRGGATACGARSIWDDM 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,738
Number of Sequences: 37544
Number of extensions: 354383
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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