Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d03r
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             272   2e-73
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)                       33   0.26 
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                29   3.2  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   4.2  
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     29   4.2  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             28   7.4  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  272 bits (668), Expect = 2e-73
 Identities = 133/190 (70%), Positives = 151/190 (79%), Gaps = 1/190 (0%)
 Frame = -3

Query: 774  VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
            V+SNASCTTNCLAPL KVI+DNF + EGLM            VDGPS K WRDGRGA QN
Sbjct: 919  VVSNASCTTNCLAPLVKVINDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQN 978

Query: 594  IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
            +IPASTGAAKAVGKVIP +NGKLTGMAFRV VA+VSVVDLT RL KPA YE IK  VK+A
Sbjct: 979  VIPASTGAAKAVGKVIPEVNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKA 1038

Query: 414  AEGPLKG-ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRV 238
            +E    G  LGYTEDQVVS+DFIG+  SS+FDA AGI LND FVKL++WYDNEYGYS RV
Sbjct: 1039 SESKEMGQYLGYTEDQVVSTDFIGERVSSVFDARAGIQLNDKFVKLVTWYDNEYGYSHRV 1098

Query: 237  IDLIKYIQSK 208
            +DL++Y+ S+
Sbjct: 1099 VDLMRYMASR 1108


>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
          Length = 148

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +1

Query: 478 INNRYISNKDAECHSSQLAIKSRDNLTHSFGSTSRGRNDVL-LSTTAITP*FSRRS---I 645
           INN +  ++        LA K+  N  HSF    + R   + +ST  +T  F  R    +
Sbjct: 10  INNLFPGSRSPRSELELLATKAAKN--HSFKKIYKIRRSFIDVSTLGLTSGFESRGSRYV 67

Query: 646 NSFLCSSCGMNSSHQALNNFKVIMNNL 726
           N+ LC  C     H+AL   K I   L
Sbjct: 68  NARLCKLCWQQRGHRALFRGKAIQGLL 94


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -3

Query: 615 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAI 436
           GR A   II   T AAKAV + +  + GK  G+A +  ++ +   ++ + L K    E  
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196

Query: 435 KQKVKEAAE 409
            ++  E++E
Sbjct: 197 LREFVESSE 205


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 519 MAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTED 373
           +AF VLV +++   L ++ GK   +E I++ ++    G  KG++ +  D
Sbjct: 432 LAFIVLVVSLNTGILWIKWGKVTVFERIRKSLRMRCVGFYKGMIRFVGD 480


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 507 VLVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 367
           V  A V+VV     +    S++A K  VK+  E PL   L YT DQ+
Sbjct: 147 VAAAAVAVVVCVGSVCSTISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 31/97 (31%), Positives = 42/97 (43%)
 Frame = +2

Query: 296  SFKEIPAAASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPRRTV 475
            S +  P+AAS  +   S   S  T   SV P     GPSAAS +    +      P+ TV
Sbjct: 1939 STQAAPSAASSTQVAPSMAPSTQTG-HSVTPSTQ-AGPSAASCSQVAQSIVATAPPKPTV 1996

Query: 476  RSTTDTLATRTRNAIPVSLPLRAGITLPTALAAPVEA 586
             STT    + T    P     +  I+L  A ++PV A
Sbjct: 1997 ASTTYQAPSTTTTTHPSQ---QTTISLVQAQSSPVAA 2030


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 606 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVS 487
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 606 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVS 487
           AQ N I    G    +G  I  +NG + GMA    +AN+S
Sbjct: 63  AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102


>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +1

Query: 367 NLIFSIPENALQRTFSCLLDLLLDGFIACRFSKTNS*INNRYISNKDAECHSSQLAIKSR 546
           N IFS   N              +  I   F KT   I N++ +NK A C S +++ K +
Sbjct: 117 NHIFSTVYNDRSNLVDEFTSKTSNNSITNAFEKTMPSIENKHDNNKHASCPSIKIS-KCK 175

Query: 547 DNLTHS 564
           +N  HS
Sbjct: 176 ENHRHS 181


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 386 PRMPFKGPSAASLTFCLMAS*LAGFPRRTVR--STTDTLATRTRNAIPVSLPLRAGITLP 559
           P+ P + P+ AS+T    A         T    STT T +T T NAI V  P ++     
Sbjct: 373 PKPPIELPTPASITSSQTAHNTTTLIDTTTSPTSTTSTASTTTANAIRVEEPPKSSFLQE 432

Query: 560 TA 565
           TA
Sbjct: 433 TA 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,260,385
Number of Sequences: 59808
Number of extensions: 419074
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)