Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d03r
         (779 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    27   0.86 
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    25   2.0  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    24   4.6  

>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 369 VVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI-QSKD*TLD 193
           V     +G +HS +      +  +D  VK   W   + GY   ++ L+  I +S D  + 
Sbjct: 168 VAEPQHLGATHSCVSPEPVNLLPDDELVKRAQWLLEKLGYPWEMMPLMYVILKSADGDVQ 227

Query: 192 QMYECKDIFQHVRRDY 145
           + ++  D  Q V  +Y
Sbjct: 228 KAHQRIDEGQAVVNEY 243


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 351 IGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI-QSKD*TLDQMYECK 175
           +G +HS +      +  +D  VK   W   + GY   ++ L+  I +S D  + + ++  
Sbjct: 150 MGATHSCVSPEPVNLLPDDELVKRAQWLLEKLGYPWEMMPLMYVILKSADGDVQKAHQRI 209

Query: 174 DIFQHVRRDY 145
           D  Q V  +Y
Sbjct: 210 DEGQAVVNEY 219


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -3

Query: 369 VVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 217
           V     +G +HS +      +  +D  VK   W   + GY   ++ L+  I
Sbjct: 168 VAEPQHLGATHSCVSPEPVNLLPDDELVKRAQWLLEKLGYPWEMMPLMYVI 218


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,386
Number of Sequences: 2352
Number of extensions: 14573
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)