Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d03r
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 293 1e-79
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 293 1e-79
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 293 1e-79
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 291 3e-79
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 291 3e-79
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 288 3e-78
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 288 3e-78
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 288 3e-78
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 288 3e-78
AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical... 33 0.30
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 32 0.53
U29244-3|AAC71088.1| 363|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical pr... 29 2.8
U97405-3|AAB53008.1| 192|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 28 6.5
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 28 6.5
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 8.6
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 8.6
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 8.6
AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical... 28 8.6
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 293 bits (718), Expect = 1e-79
Identities = 143/189 (75%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
V+SNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 VVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLTVRL KPAS + IK+ VK A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN NFVKL+SWYDNEYGYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI ++
Sbjct: 332 DLIGYIATR 340
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 293 bits (718), Expect = 1e-79
Identities = 143/189 (75%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
V+SNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 VVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLTVRL KPAS + IK+ VK A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN NFVKL+SWYDNEYGYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI ++
Sbjct: 332 DLIGYIATR 340
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 293 bits (718), Expect = 1e-79
Identities = 143/189 (75%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
V+SNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 VVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLTVRL KPAS + IK+ VK A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN NFVKL+SWYDNEYGYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI ++
Sbjct: 332 DLIGYIATR 340
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 291 bits (715), Expect = 3e-79
Identities = 143/189 (75%), Positives = 157/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
VISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 VISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLTVRL KPAS + IK+ VK A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D HSSIFD A ISLN NFVKL+SWYDNEYGYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI ++
Sbjct: 332 DLIGYIATR 340
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 291 bits (715), Expect = 3e-79
Identities = 143/189 (75%), Positives = 157/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
VISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 VISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLTVRL KPAS + IK+ VK A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D HSSIFD A ISLN NFVKL+SWYDNEYGYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI ++
Sbjct: 332 DLIGYIATR 340
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 288 bits (707), Expect = 3e-78
Identities = 139/189 (73%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 IISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLT RL KPAS + IK+ +K A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN +FVKL+SWYDNE+GYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI +K
Sbjct: 332 DLISYIATK 340
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 288 bits (707), Expect = 3e-78
Identities = 139/189 (73%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 IISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLT RL KPAS + IK+ +K A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN +FVKL+SWYDNE+GYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI +K
Sbjct: 332 DLISYIATK 340
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 288 bits (707), Expect = 3e-78
Identities = 139/189 (73%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 IISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLT RL KPAS + IK+ +K A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN +FVKL+SWYDNE+GYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI +K
Sbjct: 332 DLISYIATK 340
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 288 bits (707), Expect = 3e-78
Identities = 139/189 (73%), Positives = 158/189 (83%)
Frame = -3
Query: 774 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 595
+ISNASCTTNCLAPLAKVI+DNF I+EGLM VDGPSGKLWRDGRGA QN
Sbjct: 152 IISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQN 211
Query: 594 IIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEA 415
IIPASTGAAKAVGKVIP LNGKLTGMAFRV +VSVVDLT RL KPAS + IK+ +K A
Sbjct: 212 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAA 271
Query: 414 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 235
A+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN +FVKL+SWYDNE+GYS+RV+
Sbjct: 272 ADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVV 331
Query: 234 DLIKYIQSK 208
DLI YI +K
Sbjct: 332 DLISYIATK 340
>AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical
protein Y71H2AM.3 protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 492 VSVVDLTVRLGKPASYEAIKQKVKEAAEGPL 400
V+V D +R+G P + EA+ ++ KEAA GP+
Sbjct: 62 VNVTDNYIRIGAPPTPEALIKREKEAANGPM 92
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/85 (28%), Positives = 32/85 (37%)
Frame = +2
Query: 392 MPFKGPSAASLTFCLMAS*LAGFPRRTVRSTTDTLATRTRNAIPVSLPLRAGITLPTALA 571
+P P+AA C A+ A P + TD+ RNA A P
Sbjct: 445 VPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQVTPAPAAAPAPAD 504
Query: 572 APVEAGMMFC*APRPSRHNFPEGPS 646
APVE + AP P+ P P+
Sbjct: 505 APVEQAPVAVPAPAPAAAPAPAAPA 529
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/82 (28%), Positives = 31/82 (37%)
Frame = +2
Query: 392 MPFKGPSAASLTFCLMAS*LAGFPRRTVRSTTDTLATRTRNAIPVSLPLRAGITLPTALA 571
+P P+AA C A+ A P + TD+ RNA A P
Sbjct: 117 VPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQVTPAPAAAPAPAD 176
Query: 572 APVEAGMMFC*APRPSRHNFPE 637
APVE + AP P+ P+
Sbjct: 177 APVEQAPVAVPAPAPAAAPAPD 198
>U29244-3|AAC71088.1| 363|Caenorhabditis elegans Hypothetical
protein ZK1248.7 protein.
Length = 363
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 576 GAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLK 397
G + VI N KL G+ + V A S+ D + +G S K +G L
Sbjct: 83 GKRLTLENVINKTNMKLGGLNYTVSDAKKSMTDEQLIIGVGVSAPPAGTKYMMDNKGHLN 142
Query: 396 G-ILGYTEDQVVSSDFIGD 343
I+G+ + V + +F+GD
Sbjct: 143 PQIIGFASNAVANHEFVGD 161
>Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical
protein R06C7.1 protein.
Length = 945
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 576 GAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLK 397
G + +I N KL G+ + V A S+ D + +G S K +G L
Sbjct: 639 GKRLTLENIINKTNVKLGGLNYTVSDAKKSMTDEQLIIGVGVSAPPAGTKYMMDNKGHLN 698
Query: 396 G-ILGYTEDQVVSSDFIGD 343
I+G+ + V + +F+GD
Sbjct: 699 PQIIGFASNAVANHEFVGD 717
>U97405-3|AAB53008.1| 192|Caenorhabditis elegans Hypothetical
protein T09B4.6 protein.
Length = 192
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 415 CLLDLLLDGFIACRFSKTNS*INNRYIS 498
CL+ L L GFI C F K++S +++ IS
Sbjct: 138 CLIALFLIGFITCEFIKSSSKTHSQLIS 165
>Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical
protein R06A4.2 protein.
Length = 837
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = -3
Query: 609 GAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQ 430
G Q+N ST +G +I A+ K TG++ VL+ + V LG + + ++
Sbjct: 761 GNQENWTDKSTAKTVTIGTIIKAIETKFTGISREVLLEQKESIVEEV-LGNVENEKVLEV 819
Query: 429 KVKEAAEGPLKGILGYT 379
+ + E ++ G T
Sbjct: 820 RTEAIREALIEADFGPT 836
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 406 TFSCLLDLLLDGFIACRFSKTNS*INNRYISNKDAECHSSQLAIKSRDN 552
T+ LLD L + F+ R S TN+ ++N Y+++ D Q I + N
Sbjct: 423 TYGKLLDGLSNEFLQLRHSLTNAKVSNLYLNDIDTLDELKQNYISNMQN 471
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 447 YEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLND 295
Y Q +KE EG LK G TE++ + S + + S+I D A + L +
Sbjct: 717 YSKCSQYIKELEEGKLKAQPGCTEEETLESIILREL-STIRDHAGQVCLRN 766
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 432 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 346
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 432 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 346
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1412 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1440
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 432 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 346
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>AF003130-14|AAB54129.1| 892|Caenorhabditis elegans Hypothetical
protein F55A12.1 protein.
Length = 892
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 576 GAAKAVGKVIPALNGKLTGMAFRVLVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLK 397
G + +I N KL G+ + V + S+ D + +G S K +G L
Sbjct: 586 GKRLTLENIINKTNLKLGGLNYTVSDSKKSMTDEQLIIGVGVSAPPAGTKFMMDNKGHLN 645
Query: 396 G-ILGYTEDQVVSSDFIGD 343
I+G+ + V + +F+GD
Sbjct: 646 PQIIGFASNAVANHEFVGD 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,696
Number of Sequences: 27780
Number of extensions: 320444
Number of successful extensions: 794
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -