Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d03r
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    27   0.15 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    27   0.26 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.26 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.7  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 306 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 214
           SL++N++  IS Y+N+  Y+ ++   I YI+
Sbjct: 84  SLSNNYISNISNYNNDNNYNKKLYYNINYIE 114


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 306 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 214
           SL++N++  IS Y+N   Y+ ++   I YI+
Sbjct: 84  SLSNNYISNISNYNNNNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 306 SLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 214
           SL++N++  IS Y+N   Y+ ++   I YI+
Sbjct: 322 SLSNNYISNISNYNNNNNYNKKLYYNINYIE 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 589 SCLYWCCQSCG 557
           SC  WCC + G
Sbjct: 10  SCCCWCCDNLG 20


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 577 WCCQSCG*GYPCS 539
           + C++CG G+ CS
Sbjct: 204 YVCKACGKGFTCS 216


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 643 INSFLCSSCGMNSSHQALNNFKVIMNNL 726
           I S L +SC  ++++   NN+K +  N+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,599
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)