Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d03f
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    25   0.39 
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    25   0.39 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.4  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 67  LHLVLRLRGGMQIFVK 82



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 371 LHLVLRLRGGMQIFVK 386



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 447 LHLVLRLRGGMQIFVK 462



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 523 LHLVLRLRGGMQIFVK 538



 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12  LHLVLSVRGGGQLFNK 59
           LHLVL +RGG Q+F K
Sbjct: 599 LHLVLRLRGGMQIFVK 614


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
          protein.
          Length = 112

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 12 LHLVLSVRGGGQLFNK 59
          LHLVL +RGG Q+F K
Sbjct: 39 LHLVLRLRGGMQIFVK 54


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 362 SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWV 475
           S L  L  ++KH+L W+   +  ++    L    LLW+
Sbjct: 109 SKLHKLDNKLKHMLIWKSYKRTQIFITCELFFVILLWI 146


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 465 KHGGISTGS*YNNFFSTSLQVSRCFICSGKD 373
           KH  I        FF  S++ +R ++C  KD
Sbjct: 48  KHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 465 KHGGISTGS*YNNFFSTSLQVSRCFICSGKD 373
           KH  I        FF  S++ +R ++C  KD
Sbjct: 48  KHYNIFACDGCAGFFKRSIRRNRQYVCKAKD 78


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 281 LTTRNPS*TSTLPLKRPW 228
           LT  +PS  S  P+ +PW
Sbjct: 572 LTNWHPSDKSAKPMLKPW 589


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,748
Number of Sequences: 336
Number of extensions: 3373
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)