Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d03f
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   5e-61
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   1.0  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   4.1  
SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                27   9.4  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  231 bits (564), Expect = 5e-61
 Identities = 105/141 (74%), Positives = 122/141 (86%)
 Frame = +1

Query: 202  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 381
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 382  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 561
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 562  IHDNFEIVEGLMTTVHATTAT 624
            I+DNF + EGLMTT+HA TAT
Sbjct: 937  INDNFGLEEGLMTTIHAYTAT 957


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 44  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 166
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 440 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 526
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 437 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 303
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -2

Query: 366 RLYNIFSPSFSPWNGLRVPF*ENGNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKT 187
           R  N+    F  W GLRV   +  N   V     I N  T L      +I E +   VK 
Sbjct: 6   RAANVTKIPFDGWVGLRVKLKDAANNHEVLVPFLIANQTTDLPIIGFNVIEEIVKGYVKD 65

Query: 186 DERVIYSDHLSSLFNRSTEHQT 121
           ++  + S   SSL++  +++ T
Sbjct: 66  EDNELNSALASSLYDVESDNVT 87


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
 Frame = +2

Query: 230 MAVLRAVLRFRMDSLLLTVTKLP-FSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 406
           +A L+ V+  ++ + L  +T L   +    L P       L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 407 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 571
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 137  LLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFR--MDSLLLTVTKLPFSQK 310
            L+L+      L +T SS LT   +     P   +L +V+ F   +  L  +VT+LP S K
Sbjct: 1174 LILETSPYLQLSVTQSSQLTA-SVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVK 1232

Query: 311  GTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 406
              L         +  L + +  LP+  KHL T
Sbjct: 1233 HLLTSVMHLHASVTHLPASVTQLPVSAKHLPT 1264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,058,239
Number of Sequences: 59808
Number of extensions: 418086
Number of successful extensions: 947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)