Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d01r
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   3.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.1  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  

>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 460 CSRRSGTSRPLVFRRTLIAGSN 525
           CS  +GT +P +F+ T + G+N
Sbjct: 228 CSTHTGTKKPYIFKETRLLGNN 249


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 757 LCAVCGASPAIVCYQCNSHNDSRCIMED 674
           LC + G    +VC++C +    RC + D
Sbjct: 817 LCGIVGTEGLLVCFKCGTCVHERCYVCD 844


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 729 QSSATNATVTTTPDASWRTCR-TRCGSRAS 643
           Q+ ++   ++T+P   WR C   R GSRAS
Sbjct: 15  QNQSSEGQLSTSPPRRWRNCTLQRHGSRAS 44


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 172 CLSFIYIVLLICLAYLSFSAMY*QRLILSMKYIFRFIFS 288
           CL F +I+L++C+A L +SA +   +I    +I   IF+
Sbjct: 465 CLRFYFIILVVCIASL-YSAFW--PVIYRFYFISALIFT 500


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -2

Query: 661 LRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVC 482
           L  P  S++T  R   + V+ E  G   +  V       E NY GRCY        +E C
Sbjct: 247 LLPPIDSSETSTRYHKRQVDMEAFGEEIEEVVASY----EKNYNGRCYI------SEEAC 296

Query: 481 SCLTDGCN 458
           S  T+ C+
Sbjct: 297 SKATNDCS 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,819
Number of Sequences: 5004
Number of extensions: 49467
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)