Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d01r
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         31   1.4  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   4.1  
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   5.5  
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   5.5  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   7.2  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            28   7.2  
SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049)               28   9.5  

>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 562 RGCGWDESNYKG--RCYQRSGFGGRQEV 485
           RGC W++S  KG   CY   GFGG + V
Sbjct: 137 RGCTWEQSANKGVPWCYYPEGFGGYKMV 164


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 733 PAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ-VVEFEMNGM-PPDNRVIR 560
           P+  C +  +  D +C+ E     + QPC ++ T  R +S   V  E  GM   + R + 
Sbjct: 74  PSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHETRGMYALERRQVP 133

Query: 559 GCGWDE 542
            C  D+
Sbjct: 134 SCTCDK 139



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = -2

Query: 760 RLCAVCGASPAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ-VVEFEMNGM 584
           R+C       +  C +  +  D +C+ E     + QPC ++ T  R +S   V  E  GM
Sbjct: 6   RVCTERRQVLSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHETRGM 65

Query: 583 -PPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTL 410
              + R +  C  D    KG   +     G   +  C+T  C+++  P    T+   T+
Sbjct: 66  YALERRQVPSCTCD----KGFALKDGKCLGESHM-PCVTQPCHAS--PTRARTLSAFTV 117


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = -2

Query: 706 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 527
           S N  RCI  D      +   ST+T C     ++E   NG    + V +GC  D  +Y  
Sbjct: 11  SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 64

Query: 526 RCYQRSGFGGRQEVCSCLTDGCN 458
            C    G     +   C  D CN
Sbjct: 65  MCRGPRGKPNLHDTRCCTHDLCN 87


>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 386

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = -2

Query: 706 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 527
           S N  RCI  D      +   ST+T C     ++E   NG    + V +GC  D  +Y  
Sbjct: 14  SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 67

Query: 526 RCYQRSGFGGRQEVCSCLTDGCN 458
            C    G     +   C  D CN
Sbjct: 68  MCRGPRGKPNLHDTRCCTHDLCN 90


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -2

Query: 667  DTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQ--RSGFGGR 494
            +T+ +P KS ++        +   MN    + ++ R  G ++    GRC+   R+G   R
Sbjct: 1185 ETVEEPLKSLESS--HAVNALNHSMNNGGDNTKINRKPGLNQ----GRCFNCNRTGHIAR 1238

Query: 493  QEVCSCLTDGCNSASL 446
              VC   +  CNS  +
Sbjct: 1239 NPVCPAKSQNCNSCGI 1254


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -2

Query: 760 RLCAVCGASP---AIV--CYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE 596
           R+C  C   P   AIV  C +   HN  R +       L   C  ++  C+ I  V+  +
Sbjct: 283 RVCGACLDRPNCRAIVATCSREQPHNSGRSLQTLCQRALFNGCHDSNGTCKMICDVIGVK 342

Query: 595 MNG 587
           +NG
Sbjct: 343 LNG 345


>SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 712 CNSHNDSRC-IMEDLPDTLRQPCKSTDTMCRKI 617
           CNS ND+ C  +E L +++  PC S D  C  I
Sbjct: 34  CNS-NDALCDSIEALSNSIDAPCNSNDAFCDSI 65


>SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 181 FIYIVLLICLAYLSFSAMY*QRLILSMKYIFRFIFSFRERLYQCIFRFKL 330
           FI+I+ L+ +A L +     Q   L++++  RF+ S RER +    R +L
Sbjct: 41  FIFILFLLFVAILYYFRRRQQIHTLALQFGRRFVPSIRERYHTYTVRLRL 90


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 485  LLVPDRRLQLSVVTSYGNNSDAPHASTPEVLAITLQPT 372
            LLVP   +  +V+T Y  + ++P  S  EVLA T   T
Sbjct: 1666 LLVPQAEILPTVLTLYMGDGNSPLPSAAEVLACTPDTT 1703


>SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = -2

Query: 655 QPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCG-----WDESNYKGRCYQRSGFG-GR 494
           + C  +D  C K+ +V +++    P    VI+GC      W  S Y+G C +   FG G 
Sbjct: 38  ETCLKSDEKCFKM-EVRDYKSLDKP---YVIKGCTGDSIFWRRSCYEG-CKENREFGSGT 92

Query: 493 QEVC--SCLTDGCNS 455
             +C   C +D CN+
Sbjct: 93  YRICIYCCDSDRCNA 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,918,497
Number of Sequences: 59808
Number of extensions: 403548
Number of successful extensions: 1285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)