Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d01r
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    34   0.096
Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    33   0.29 
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    33   0.29 
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   2.7  
Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   6.3  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 553 GWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTLALLKF*PSLSN 377
           GW +      C +   +G + E+C C  D CNS    V  T++ L T  L+ F P L N
Sbjct: 89  GWQQKKTGEYCRKSRDYGKKGEICCCADDMCNS----VRQTSLALFTSILIIF-PVLLN 142


>Z74038-4|CAA98495.1|  125|Caenorhabditis elegans Hypothetical
           protein F58B4.3 protein.
          Length = 125

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = -2

Query: 673 LPDTL-RQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGG 497
           +PDT  RQ C      C K   VV+F         + +        N    C   S FG 
Sbjct: 31  VPDTSQRQECGIGSLTCVK---VVDFTRGTYTKQCQTMNCTLNGMQNAAANCQNSSAFGV 87

Query: 496 RQEVCSCLTDGCNSA 452
               C C  DGCNS+
Sbjct: 88  NGATCCCYGDGCNSS 102


>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = -2

Query: 751 AVCGASPAIVCY--QCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGMP 581
           A CG    + C   QC    +    ++ L + L+ P +S    C   +   +   M  +P
Sbjct: 152 AQCGGGEGMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAVP 211

Query: 580 PDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 482
            ++   + + C  +   Y+GRC  R GF  +   C
Sbjct: 212 LNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 246


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = -2

Query: 751 AVCGASPAIVCY--QCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGMP 581
           A CG    + C   QC    +    ++ L + L+ P +S    C   +   +   M  +P
Sbjct: 289 AQCGGGEGMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAVP 348

Query: 580 PDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 482
            ++   + + C  +   Y+GRC  R GF  +   C
Sbjct: 349 LNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 383


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 359 VTCVHHSSKDNLNRKIH*YKRSLKLKINLKIYFIDNIRRC*YIALKDKY 213
           +T V   +KD  N  ++  + S+    NL I+ I N+R   +IA++ KY
Sbjct: 12  LTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 266 ISLDLFLVLENVCINVSSDLNYPSNYDEHKSPV 364
           I++DLFL+L+++  ++S     PSNYD H+S V
Sbjct: 211 ITIDLFLLLKSMQKSLS-----PSNYDRHRSAV 238


>Z74038-7|CAE17835.1|  132|Caenorhabditis elegans Hypothetical
           protein F58B4.6 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 523 CYQRSGFGGRQEVCSCLTDGCNSA-SLPVMGTTVMLLTLALLKF 395
           C+  +        C C  DGCNS+ S+  +G++++ + +++  F
Sbjct: 88  CFNTTSGSSVMGTCCCYGDGCNSSPSMLPLGSSILAVMISMFIF 131


>U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical
           protein K11H12.7 protein.
          Length = 127

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/95 (23%), Positives = 34/95 (35%)
 Frame = -2

Query: 736 SPAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRG 557
           S A+ CY CNS N   C+          P KS   M              +  +  ++R 
Sbjct: 14  SAALNCYICNSLNQPECVHNYEKFNKICPVKSFGGMKSVKPLGCRVSRQYVKEETSIVRE 73

Query: 556 CGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSA 452
           C +   + + R   +   G  +    C  + CNSA
Sbjct: 74  CAYTGEDIE-RKSNKGSLGVSRVYSQCSENLCNSA 107


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 577  DNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCN 458
            D+ + R CG ++   + +C  RSG+   QE  +C++D CN
Sbjct: 1571 DSCLNRQCGMNQVCIQDQCQCRSGYLVLQE--TCISDRCN 1608


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 529 GRCYQRSGFG-GRQEVCSCLTDGCNSASLPVMGTTVMLLTLALL 401
           G+C++    G G ++ C C  + CNS++  +  T  +L+ L+L+
Sbjct: 82  GKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGILIILSLV 125


>Z75547-7|CAA99904.1|  302|Caenorhabditis elegans Hypothetical
           protein R11D1.6 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 111 WTLLF*HLGHVCVNTSMLLELFIVYL 188
           W+L   HL +VCV  +++L  +++YL
Sbjct: 6   WSLFCGHLQNVCVCLTIILNCYMIYL 31


>Z49966-7|CAD57696.1|  125|Caenorhabditis elegans Hypothetical
           protein F35C11.7 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 753 VRFVEQAQQSSATNATVTTTPDASWRTCRTRCGS 652
           ++    A QSS + +T T    + W TC   CGS
Sbjct: 28  IQIPTNAPQSSTSCSTATWLVWSDWSTCSDECGS 61


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 26/100 (26%), Positives = 39/100 (39%)
 Frame = -2

Query: 748 VCGASPAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNR 569
           VCG+ P+    QCN      C ++  P        STD     +  VV    +G P    
Sbjct: 342 VCGSCPSGT--QCNQQLQMCCPLQQQP--------STDI----VYNVVLLCPDGTPSTTS 387

Query: 568 VIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSAS 449
             +GCG + + ++G C       G+  V  C +  C   S
Sbjct: 388 CSKGCGPNNACFQGACCPIRCPVGQNAVGFCSSGSCGVGS 427


>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = -3

Query: 753 VRFVEQAQQSSATNATVTTTPDASWRTCRTRCGSR---ASPLTQCAGXXXXXXXXX*TAC 583
           V+ V+  Q  S+  + +   PD++W+ C  + G++   +     C G          T  
Sbjct: 196 VKHVDTEQLVSSIVSDIAQGPDSAWKQCLAQAGNKWRSSEDGYSCMGSIRDLSTRATTPA 255

Query: 582 PRITESSEG-----AGGMKATTRAVATS 514
              + S +G       G+  TTR+++TS
Sbjct: 256 SNFS-SEDGMHTLTGNGLGGTTRSISTS 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,281
Number of Sequences: 27780
Number of extensions: 296380
Number of successful extensions: 1084
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)