Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d01f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         31   0.94 
SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     30   1.6  
SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049)               29   2.2  
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)                      29   2.2  
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   3.8  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   29   3.8  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   3.8  
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           29   3.8  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   5.0  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               28   6.6  
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)               28   6.6  
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)                28   6.6  
SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)                27   8.8  

>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 308 RGCGWDESNYKG--RCYQRSGFGGRQEV 385
           RGC W++S  KG   CY   GFGG + V
Sbjct: 137 RGCTWEQSANKGVPWCYYPEGFGGYKMV 164


>SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 110 ALCGFVEQGQAIVCYQCNSHNDSRC-IMEDLPDTLRQPCKSTDTMCRKI 253
           A C  ++     +   CNS ND+ C  +E L +++  PC S D  C  I
Sbjct: 18  AFCNSIDAFSNSINAPCNS-NDALCDSIEALSNSIDAPCNSNDAFCDSI 65


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/81 (28%), Positives = 32/81 (39%)
 Frame = +3

Query: 93  TFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRTRCGSRASPLTQCAGXXXXXXXX 272
           T  +S +CA + +  K  SAT ATV T       T  T   +       CA         
Sbjct: 336 TKGYSVMCATVATNTKCYSATCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCY 395

Query: 273 XXTACPRITESSEGAGGMKAT 335
             T CP +  +++G   M AT
Sbjct: 396 SVT-CPTVATNTKGYSVMCAT 415



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = +3

Query: 93  TFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRTRCGSRASPLTQCAGXXXXXXXX 272
           T  +S +CA + +  K  S T ATV T       T  T   +       CA         
Sbjct: 266 TKGYSVMCATVATNTKCYSVTCATVATNTKCYSATRATMATNTKCYSATCATMATSTKCY 325

Query: 273 XXTACPRITESSEGAGGMKAT 335
             T CP +  +++G   M AT
Sbjct: 326 SVT-CPTVATNTKGYSVMCAT 345


>SB_15477| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0049)
          Length = 132

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
 Frame = +2

Query: 77  MNKMAYFFVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKIS 256
           M  +A FF+  A    V       C+ C       C  E   +T    C  +D  C K+ 
Sbjct: 1   MKILAAFFLLGANVSLVLSQNRTSCFTCTG-----CKGEYGTET----CLKSDEKCFKM- 50

Query: 257 QVVEFEMNGMPPDNRVIRGCG-----WDESNYKGRCYQRSGFG-GRQEVC--SCLTDGCN 412
           +V +++    P    VI+GC      W  S Y+G C +   FG G   +C   C +D CN
Sbjct: 51  EVRDYKSLDKP---YVIKGCTGDSIFWRRSCYEG-CKENREFGSGTYRICIYCCDSDRCN 106

Query: 413 S 415
           +
Sbjct: 107 A 107


>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
          Length = 387

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 107 AALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNG 283
           + L G    G+A  C  CN  +D +C    L  T   P KS    C++I Q   F  +G
Sbjct: 97  SGLSGLSSSGEASACL-CNCGSDKQCEAHGLGMTSDNPAKS----CKEILQKNRFAKSG 150


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = +2

Query: 164 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 343
           S N  RCI  D      +   ST+T C     ++E   NG    + V +GC  D  +Y  
Sbjct: 11  SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 64

Query: 344 RCYQRSGFGGRQEVCSCLTDGCN 412
            C    G     +   C  D CN
Sbjct: 65  MCRGPRGKPNLHDTRCCTHDLCN 87


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 144 IAWPCSTKPHKAAKTKKYAILFIVEIIPVFPAANRKRNQLTTTASA 7
           I+W   T  +   + + Y + +I  I+P+FPA++R R  ++   S+
Sbjct: 318 ISWQPVTYENPDIRVRGYNVTYI--ILPIFPASSRNRRAVSHVVSS 361


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
 Frame = +2

Query: 98  FVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ-VVEFE 274
           +V   +C    Q  +  C +  +  D +C+ E     + QPC ++ T  R +S   V  E
Sbjct: 2   YVRQRVCTERRQVLSCTCDKGFALKDGKCLGESHMPCVTQPCHASPTRARTLSAFTVVHE 61

Query: 275 MNGM-PPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVML 451
             GM   + R +  C  D    KG   +     G   +  C+T  C+++  P    T+  
Sbjct: 62  TRGMYALERRQVPSCTCD----KGFALKDGKCLGESHM-PCVTQPCHAS--PTRARTLSA 114

Query: 452 LTL 460
            T+
Sbjct: 115 FTV 117


>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 386

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = +2

Query: 164 SHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKG 343
           S N  RCI  D      +   ST+T C     ++E   NG    + V +GC  D  +Y  
Sbjct: 14  SVNVYRCICSDCRSNAGEQTCSTETGCFSSLFLLE---NGQ---SSVTKGCLKDADHYNM 67

Query: 344 RCYQRSGFGGRQEVCSCLTDGCN 412
            C    G     +   C  D CN
Sbjct: 68  MCRGPRGKPNLHDTRCCTHDLCN 90


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +2

Query: 203  DTLRQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQ--RSGFGGR 376
            +T+ +P KS ++        +   MN    + ++ R  G ++    GRC+   R+G   R
Sbjct: 1185 ETVEEPLKSLESS--HAVNALNHSMNNGGDNTKINRKPGLNQ----GRCFNCNRTGHIAR 1238

Query: 377  QEVCSCLTDGCNSASL 424
              VC   +  CNS  +
Sbjct: 1239 NPVCPAKSQNCNSCGI 1254


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 385  LLVPDRRLQLSVVTSYGNNSDAPHASTPEVLAITLQPT 498
            LLVP   +  +V+T Y  + ++P  S  EVLA T   T
Sbjct: 1666 LLVPQAEILPTVLTLYMGDGNSPLPSAAEVLACTPDTT 1703


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 135 PCSTKPHKAAKTKKYAI--LFIVEIIPVFPAANRKRNQLTTTASAHC 1
           P S  P+K   T K+ +     V I+P  P+ N   +QLT+   A C
Sbjct: 515 PASQAPNKPLSTFKHTVGDSRYVPIVPKPPSLNTTSSQLTSVQLASC 561


>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 69  SRQ*IKWRTFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRT 206
           +R  +   T  +S +CA + +K    SAT ATV T       TC T
Sbjct: 43  TRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCAT 88


>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
          Length = 194

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 69  SRQ*IKWRTFSFSRLCAVLWSKAKQSSATNATVTTTPDASWRTCRT 206
           +R  +   T  +S +CA + +K    SAT ATV T       TC T
Sbjct: 43  TRATVATNTKCYSVMCATVATKTNCYSATRATVATNTKCYSVTCAT 88


>SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)
          Length = 624

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 361 RVRRKTRGLLVPDRRLQLSVVT----SYGNNSDAPHASTPEVLAITLQPTV 501
           R+  KTR + VPDRR+ L ++     S G  S     S  +V A    P+V
Sbjct: 520 RISGKTRRISVPDRRISLPMIRVEDWSVGGRSQNTSPSDQDVNASYHHPSV 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,714
Number of Sequences: 59808
Number of extensions: 357466
Number of successful extensions: 1363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)