Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c23f
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 246 1e-65
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 243 1e-64
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 3.7
09_06_0103 + 20873310-20873382,20873530-20873735 29 3.7
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 5.0
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 5.0
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 6.5
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 6.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.5
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 8.7
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 8.7
05_01_0127 - 863755-865182 27 8.7
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 8.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 246 bits (602), Expect = 1e-65
Identities = 114/184 (61%), Positives = 140/184 (76%)
Frame = +1
Query: 49 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 228
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 229 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 408
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 409 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 588
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 589 LLAR 600
LLAR
Sbjct: 181 LLAR 184
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 243 bits (594), Expect = 1e-64
Identities = 111/173 (64%), Positives = 134/173 (77%)
Frame = +1
Query: 82 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 261
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 262 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 441
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 442 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 149 TFSAPRWVVAASILVTSSSLRASTSNP 69
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 327 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 434
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 331 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 176
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 156 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 263
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 102 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 281
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 282 VRHLITALRSACCTEVCR 335
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 4 FFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 171
+F ++ HY + VT +AT G + ++ L +ED+ K L+A H E + MET+
Sbjct: 246 WFRNKGHYIKSQVT--AAT--GAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 159 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 338
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 339 HRC 347
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 192 WYPCDQLASYLGKTCSGCSCCRSHREP 272
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 594 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 496
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 146 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 33
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>05_01_0127 - 863755-865182
Length = 475
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 425 KRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFSTAR*P 306
KRR +A ++ + PG RP G P AA+ A P
Sbjct: 209 KRRNGEHACEVYTLGKPGGWRPCAGRVPASAASILPAMPP 248
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 337 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 510
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 511 DSPLR 525
+ P++
Sbjct: 330 EQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,573,335
Number of Sequences: 37544
Number of extensions: 460301
Number of successful extensions: 1116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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