Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c23f
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               307   4e-84
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.72 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   0.95 
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   2.9  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   2.9  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   2.9  
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  29   3.8  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   5.1  
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 28   6.7  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  28   6.7  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   8.8  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 27   8.8  
SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                27   8.8  
SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)               27   8.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  307 bits (754), Expect = 4e-84
 Identities = 140/181 (77%), Positives = 159/181 (87%)
 Frame = +1

Query: 61  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 240
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 241 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 420
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 421 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 601 E 603
           E
Sbjct: 181 E 181


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
 Frame = +3

Query: 234  CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 398
            CS C      R    CV   I  L  + C   C  + H   A    C   H+ C      
Sbjct: 822  CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874

Query: 399  SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 545
            SCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 507  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 343
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 433 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 528
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 414 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 539
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 507 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 349
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 507 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 349
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 260 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 418
           PSRTPL   ++ +G  +S+ Y       VLR+ R   H ++ ++R  L ++N+
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 409 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 558
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 228 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCG 362
           +TC  C+ C        C      +L+  C  +   AHRC   CG
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCG 633


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 291 DDEHISGVLDGYDSTSSQNK 232
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSSSK 79


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 291 DDEHISGVLDGYDSTSSQNK 232
           ++EHI+ VLDGYD   S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 171 CLQTTC*WYPCD-QLASYLGKTCSGCSC 251
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 288  HLITALRSACCTEVCRAHRCYAYCGTF 368
            + + + R +  T++ R HRC  YC  F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


>SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 258 SHREPR*CVRHLITALRSA 314
           +HR PR  V HL TA+RSA
Sbjct: 44  AHRSPRTIVEHLDTAIRSA 62


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 431 TIKRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFS 321
           T+++RG ++A + W       +RP+     VC+ N S
Sbjct: 122 TMEKRGRKSATYFWPSSTSYERRPSFFADHVCSVNCS 158


>SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)
          Length = 241

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = +3

Query: 249 CCRSHREPR*CVRHLITALRSACCTEVCRAH-RCYAYCGTFHTRCFY*PDPSCIP*TSSL 425
           CC      R C+ H    L   CC  VC A   C   C   H  C       CI   S  
Sbjct: 16  CCCGSALKRNCLVHSDCGLAKKCCENVCLARLSCDGSCSA-HMDCDQDYGEECI--KSRC 72

Query: 426 DCI-GPC 443
            C+  PC
Sbjct: 73  RCVREPC 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,408
Number of Sequences: 59808
Number of extensions: 520155
Number of successful extensions: 1229
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)