Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c23f
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 268 2e-72
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 36 0.029
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.029
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 35 0.051
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 0.84
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.84
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.84
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 0.84
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 30 1.1
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 30 1.1
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 30 1.1
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 29 1.9
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 4.5
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 28 4.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 5.9
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 5.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 5.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 5.9
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 27 7.8
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 7.8
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 7.8
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 268 bits (657), Expect = 2e-72
Identities = 118/181 (65%), Positives = 146/181 (80%)
Frame = +1
Query: 61 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 240
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 241 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 420
AARA+ A+ENPADV V+S+RP+ QRA+LKFAAHTGAT I GRF+PG TNQIQ F+EPR
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120
Query: 421 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
LL++ DP DHQ +TEASYV +PVI+ NT+SPL+ +DI +PCN K SIGLMWW+LAR
Sbjct: 121 LLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAR 180
Query: 601 E 603
E
Sbjct: 181 E 181
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 240 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 362
GC CC + C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 240 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 362
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 240 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 362
GC CC C R T R+ CCT C R C CG
Sbjct: 81 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 240 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 362
GC CC C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 240 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 362
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.051
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 237 SGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHTRCFY*PDPSCIP*T 416
S SCC S C+ + +S+C T +C+ +C C T PSC
Sbjct: 38 SSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQ-QQCSNQCNQQCTSITISSGPSCSSCQ 96
Query: 417 SSLDCIGPCTRPS 455
S+ C CT P+
Sbjct: 97 SA--CSSACTTPT 107
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 307 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 468
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 368 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 520
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 368 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 520
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 368 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 520
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 368 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 520
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 287 SSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNLVS*LYWTLHKTI 454
S+HH V +L S P L++ + + + + R K H +N S Y TL T+
Sbjct: 100 SAHHMNRVFLLLNSYPENSNLKIEQMLREETSFVARQKYHEMNWDSWYYITLVSTV 155
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 474 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 581
+C+HS + K CGHC PM +HQ P + D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Frame = +1
Query: 274 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 453
A V+ +++ P A + G P+A P Q A+ +P ++ A
Sbjct: 7 AQVYPVATGPQMDSAPPPYTV-VGGAPVAVEMQPVYAAYPQQQAYGQPTVV----QAHVV 61
Query: 454 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT----KSSHSIGLMWWLL 594
Q T+A+ + + + D P +++ C T ++ HSIG WW++
Sbjct: 62 QQPTQATVIISASVKHVDQDKP--YLEYCPRCQTSVTTRTVHSIGTCWWII 110
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +3
Query: 120 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 296
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 297 TALRSACCTEV-CRAHRCYAYCGT 365
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 553 TKSSHSIGLMWWLLA 597
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +3
Query: 120 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 296
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 297 TALRSACCTEV-CRAHRCYAYCGT 365
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +3
Query: 120 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 296
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 297 TALRSACCTEV-CRAHRCYAYCGT 365
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 502 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
CNTD+ R + CNT + +G+ + L+AR
Sbjct: 49 CNTDAEFRLIQCCSSCNT---NGVGIAYDLVAR 78
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 31 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 207
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 208 NLRRTWEKLVLAARAVVAI 264
T +V + +A+
Sbjct: 204 EDSATILNIVDEMKKTLAV 222
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 31 RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 207
R+V T+ +L ++ D T LAA L ++++ +E Y+ KR TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203
Query: 208 NLRRTWEKLVLAARAVVAI 264
T +V + +A+
Sbjct: 204 EDSATILNIVDEMKKTLAV 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,011
Number of Sequences: 27780
Number of extensions: 379404
Number of successful extensions: 910
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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