Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c22f
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 34 0.084
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 32 0.34
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 29 1.8
12_01_0378 - 2946916-2947590 27 9.7
07_01_1073 + 9566727-9566963,9566992-9567180 27 9.7
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 27 9.7
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 9.7
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 27 9.7
>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = -3
Query: 487 NELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITD 308
NEL ++ F+L V +I +NI+ QR S + V+ N + G+ +++ I +
Sbjct: 895 NELKSEELESFLLVVDGANFSIPELNILMQRYSGACSWVNHANNIVGKLLERNDYDNIVE 954
Query: 307 DVLGALE 287
++ G L+
Sbjct: 955 ELTGILK 961
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 370 HKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 227
++L G GED++ LNWET LGA G+ H +H + +FVH
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 113 DILEEQLYNSIVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 286
DIL E LY S ++DY D ++L + + + N++ + ++NN+ + +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294
Query: 287 LQGSKDIVRDCFP 325
+ + +++ FP
Sbjct: 295 SKSAWQVIQCAFP 307
>12_01_0378 - 2946916-2947590
Length = 224
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 23 GYNAPKMKPVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYD 163
G + ++P +++L ASL AA++ VP + ++ ++V D+D
Sbjct: 87 GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133
>07_01_1073 + 9566727-9566963,9566992-9567180
Length = 141
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 152 QRRCYCKAAPPEC 114
QRRC C+ +PP C
Sbjct: 102 QRRCRCRGSPPRC 114
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 359 IKLMYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTE 535
I+L+ + G + S+D LA +G D PKV K IAL E N ++ TE
Sbjct: 365 IRLVVDKSGQSFLSSDDRDDGSSLLAKSEGLDL--PKVGQKRIALDEENSFPKRLKMTE 421
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.1 bits (57), Expect = 9.7
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 120 WRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPINF----G 287
W + FT+ +S P T + A T R ++ T Y + T P+N G
Sbjct: 41 WITRFTLQASPPATAA-IPAAVAATTRAGVPAAPPHPT--YSISCSTPPRPPLNLSGGGG 97
Query: 288 SRAPRTSSVIVSQLSSDLSSPK-TPLSLCTSATVS 389
+R P+TS + LSS SS + +P SA+VS
Sbjct: 98 ARTPQTSQTLALALSSSSSSCRSSPDPATASASVS 132
>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 264 WSTPINFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTA 419
WS N S A RT+ LS+ +SS +TP+ L + L + + FT+
Sbjct: 1236 WSVISNLSSNAKRTTGYEKPILSNLISSTQTPVELTELHEIKLMQLNVPFTS 1287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,478
Number of Sequences: 37544
Number of extensions: 241336
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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