Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c20r
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 41 2e-04
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 29 0.64
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 2.6
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.9
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 7.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 7.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 7.9
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Frame = -3
Query: 671 ELAEEYLELVYRYPCPSSY-----VRGHLFKIFHKIFTFDENNDDRQLLA---TAQNIND 516
++ EEYL ++ + S Y ++GHLFK+ + + + D R LA T ++
Sbjct: 261 DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSI--HTDIRSKLAQGCTPRDFET 318
Query: 515 FKKVCENLKNKYQPYQE-GKIHYEDE--ENISRTGYNLILPPWICQPYVR 375
F V L+ + +E G+I+ + + E++ + ++P W QPY+R
Sbjct: 319 FPPVVAMLRKRLLECEEKGEINEDKDVKESVKDSMGYPVIPWWRVQPYIR 368
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 356 YVLLVTFSHKVDISMVVKLNCTLSWIYFLHLHNVFSLLDKVDI 484
Y+ L F+ K+ + + T++W Y H LDKV +
Sbjct: 180 YLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFLDKVHV 222
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 584 KIFTFDENNDDRQLLATAQNINDFKKVCEN 495
K+ + DE+ ++ QL ATA+ IN +C N
Sbjct: 146 KVISVDESEENEQLEATARLINRAFTICIN 175
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 344 AFSVYVLLVTFSHKVDISMVVKLNCTLSWIYFLHLHNVFSLLDKVDI 484
AFS+Y +S IS L CTL W+ L+ + + D + I
Sbjct: 164 AFSLYTHFSIYSCAEKISNTSLLLCTLPWVRSLYKELMTRIFDGIVI 210
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = -3
Query: 560 NDDRQLLATAQNINDFKKVCENL--KNKYQPYQE---GKIHYEDEENISRTGYNLILPPW 396
NDD+ L Q + DF KV +NL N + + + G + EN +R ++
Sbjct: 562 NDDQSKLWYFQGLCDFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNR-ALKILKSAI 620
Query: 395 ICQPYVRMS 369
+ +P++RMS
Sbjct: 621 LYRPHLRMS 629
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 62 EQVSCDLYNPSL--LRNTYFYNIFYIICMYIYRPED*DIYH*NKY 190
++ S D Y P + + + FY+++ I R E DIYH N Y
Sbjct: 348 KRTSHDPYPPRMDDISSAIFYSVWNQSIAAIIRREKVDIYHINDY 392
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 545 LLATAQNINDFKKVCENLKNKYQPYQEGKIHYEDEENISRTGYNLILP 402
++A + F E K+ +Q ++ YED NI+ ++LILP
Sbjct: 71 VVADCSYVTHFTSRMEAKKHIFQEFEGVSTLYEDSFNINVQIHSLILP 118
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 377 SHKVDISMVVKLNCTLSWIY 436
S +V I V+ L C LSWIY
Sbjct: 505 SSEVIIDEVISLVCDLSWIY 524
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 659 EYLELVYRYPCPSSYV 612
E L Y YPCP+S+V
Sbjct: 402 EKASLAYTYPCPTSHV 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,715
Number of Sequences: 5004
Number of extensions: 52610
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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