Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c20r
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0515 - 3846405-3846449,3846804-3846899,3846980-3847058,384...    29   2.6  
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131...    29   2.6  
10_01_0319 - 3504800-3505315,3505575-3505769                           29   3.5  
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245     28   6.1  
02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072     28   6.1  
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488...    28   8.1  

>07_01_0515 -
           3846405-3846449,3846804-3846899,3846980-3847058,
           3847144-3847233,3847529-3847626
          Length = 135

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -3

Query: 599 FKIFHKIFTFDENNDDRQLLATAQNINDFKKVCENLKNKYQPYQEGKIHYED 444
           +KI  ++ T +++   +   A  Q IND  K  ENLK   Q +++ KI YE+
Sbjct: 84  YKILVRVHTANQSTPTQ---AYTQAINDLDKELENLK---QAFEDEKIRYEE 129


>03_06_0014 -
           31012116-31012229,31012773-31012985,31013058-31013171,
           31013909-31014040,31014624-31014692,31014763-31015017,
           31015347-31015520,31016104-31016280,31016999-31017107,
           31017343-31017506,31018221-31018517
          Length = 605

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = -3

Query: 572 FDENNDDRQLLATAQNINDFKKVCENLKNKYQPYQE--------GKIHYEDEENISRTGY 417
           FD+N++D   LA   + +D K   E+L N   PY+E           HYE +ENI     
Sbjct: 169 FDDNDEDG--LAPYGSRDDNKHAHESLMNDEGPYEELLPEDMVDEDKHYEPDENIEHELK 226

Query: 416 NLILPPWICQPYVRMSPEAHTQKMH 342
           +  L P +     RM P     +M+
Sbjct: 227 DKPLGPPLNLVVPRMLPPGQPDRMN 251


>10_01_0319 - 3504800-3505315,3505575-3505769
          Length = 236

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 482 YQPYQEGKIHYEDEENISRTGYN 414
           Y+PY  G +HY   E ++ +G N
Sbjct: 104 YEPYMVGTLHYNSPEQLTESGLN 126


>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
          Length = 396

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 671 ELAEEYLELVYRYPCPSSYVRGHLFKI 591
           +L  EYL+L  +YP P   VR H+ K+
Sbjct: 309 DLVIEYLKLCEQYPVPWRMVRSHVHKM 335


>02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072
          Length = 735

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 218 DQNQNGRNGDICFNDKCPNPLGG 150
           D ++  R+ D CF +KC N LGG
Sbjct: 287 DIDECERDKDACFGNKCTNTLGG 309


>09_02_0140 +
           4879319-4879968,4881443-4881942,4884230-4884368,
           4886005-4886156,4886267-4886532,4886902-4887028,
           4887111-4887179,4887270-4887518,4887636-4888012
          Length = 842

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 197 NGDICFNDKCPNPLG 153
           N D+C ND CP+P G
Sbjct: 434 NPDLCINDTCPSPNG 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,357
Number of Sequences: 37544
Number of extensions: 292423
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)