Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c20r
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-3|CAB03067.1|  527|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    28   5.5  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    28   7.3  

>Z81077-3|CAB03067.1|  527|Caenorhabditis elegans Hypothetical
           protein F36A2.2 protein.
          Length = 527

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
 Frame = -3

Query: 677 TWELAEEYLELVYRYPCPSSYVRGHLFKIFHKIFTFDENNDDRQLLATAQNINDFKKVCE 498
           TW++A EYLE   ++   +S +R H+F+I H   +  E  D R  ++    I DF+ + E
Sbjct: 307 TWKIAAEYLEYAKKFNAGTSAIRAHVFRICH--HSLLEYEDLRMRVSLEHRIEDFENIVE 364

Query: 497 NLKNKYQPYQEGKIHYEDE-----ENISRTG--YNLI----LPPWICQPYVRMSPEAHTQ 351
            L  + +   E   + E E     ENI R G   N I     P WI +PY R+   A   
Sbjct: 365 ELAKRAKSDAEAGKNREVEARTLFENI-RNGILMNAIEVSKQPHWISKPYFRLKEVAKES 423

Query: 350 KMHELSKNQNNQECKRI 300
            + E  K    ++ +++
Sbjct: 424 IVGEGEKTFREKQKEKL 440


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 65  QVSCDLYNPSLLRNTYFYNIFYIICMYIYRPED 163
           +V+  L  PS +   +F++IFY+  MY+   +D
Sbjct: 32  RVTYQLLRPSQISFLFFFSIFYVFKMYVQNVKD 64


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 300 NSFTFLIVLIFT*LVHFLCMCFW*HSHIRL 389
           N+  FL+ L F     FLC+CF  +  IR+
Sbjct: 191 NTIIFLVTLFFAASFGFLCLCFTIYDIIRM 220


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 273 YMISILVFINSFTFLIVLIFT 335
           +M S+ ++I SFT  IVL+FT
Sbjct: 128 FMFSVFIYIPSFTQFIVLMFT 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,564
Number of Sequences: 27780
Number of extensions: 290376
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)