Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c20r
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.52 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.52 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              24   1.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 626 PSSYVRGHLFKIFHKIFTFDENNDDRQLLATAQNINDFKKVCE 498
           P  + R H FK   +    ++ +  R+L+  A   NDF K  E
Sbjct: 65  PRDFPRSHRFKSLPRCQLSNKRDRSRELIKAAILANDFMKNLE 107


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = -3

Query: 461 KIHYEDEENISRTGYNLILPPWICQPYVR-MSPEAHTQKMHELSKNQN------NQECKR 303
           KI   + E++S +G + IL P     YV+ +SPE   + +H L   QN       ++ KR
Sbjct: 301 KIEPAEAESLSTSGSSGILTPVSPYGYVKPISPEQE-ELIHRLVYFQNEYEQPSEEDLKR 359

Query: 302 I-NEDQDGNHIS 270
           I N+  +G  IS
Sbjct: 360 ITNQPSEGEDIS 371


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 62  HTRREIAKLFANKN 21
           H  REIAK+F N+N
Sbjct: 82  HVSREIAKIFLNEN 95


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 473 YQEGKIHYEDEENISRT 423
           YQ+  IHYE  +NI  T
Sbjct: 288 YQQNDIHYEGVQNILDT 304


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 473 YQEGKIHYEDEENISRT 423
           YQ+  IHYE  +NI  T
Sbjct: 288 YQQNDIHYEGVQNILDT 304


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 473 YQEGKIHYEDEENISRT 423
           YQ+  IHYE  +NI  T
Sbjct: 288 YQQNDIHYEGVQNILDT 304


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 500 ENLKNKYQPYQEGKIHYEDE 441
           ++L NKY P ++ ++ +E+E
Sbjct: 103 DSLANKYDPDKKYRVKFEEE 122


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 473 YQEGKIHYEDEENI 432
           YQ   +HY+ +ENI
Sbjct: 286 YQANNVHYQGKENI 299


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 500 ENLKNKYQPYQEGKIHYEDE 441
           ++L NKY P ++ ++ +E+E
Sbjct: 103 DSLANKYDPDKKFRVKFEEE 122


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 500 ENLKNKYQPYQEGKIHYEDE 441
           ++L NKY P ++ ++ +E+E
Sbjct: 103 DSLANKYDPDKKYRVKFEEE 122


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 607 DIYSKFSIKFSPLMRTMMTDNY 542
           D+Y +  ++ S + RTM  +NY
Sbjct: 697 DMYFRRQVELSNMYRTMEANNY 718


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,087
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)