Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c20f
(588 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:... 255 5e-67
UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=... 244 9e-64
UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Nov... 215 5e-55
UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whol... 175 6e-55
UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep: ... 211 8e-54
UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11; S... 207 2e-52
UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;... 205 7e-52
UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus lu... 198 1e-49
UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein ECU07_... 193 2e-48
UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1; ... 191 1e-47
UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, wh... 186 4e-46
UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2; ... 180 3e-44
UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=... 179 4e-44
UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein; ... 174 1e-42
UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;... 172 6e-42
UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1; ... 169 3e-41
UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;... 167 2e-40
UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative... 119 3e-39
UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;... 162 5e-39
UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1; ... 161 1e-38
UniRef50_Q7RX85 Cluster: Putative uncharacterized protein NCU000... 154 1e-36
UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1; ... 150 3e-35
UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2; ... 145 6e-34
UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,... 141 1e-32
UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putativ... 129 5e-29
UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;... 126 5e-28
UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1; ... 120 2e-26
UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=... 118 8e-26
UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829 p... 115 7e-25
UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1; ... 113 2e-24
UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1; ... 111 1e-23
UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to dihydrouri... 106 3e-22
UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep: N... 106 3e-22
UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine syn... 106 4e-22
UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;... 105 1e-21
UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3; Bacter... 103 2e-21
UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1; ... 103 4e-21
UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;... 100 2e-20
UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel prot... 100 2e-20
UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep: CG1049... 100 3e-20
UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;... 99 7e-20
UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lambl... 99 9e-20
UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1; Paraba... 97 4e-19
UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lambli... 97 4e-19
UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1; ... 97 4e-19
UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel prot... 96 6e-19
UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4; Prot... 95 8e-19
UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2; Culi... 95 8e-19
UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24... 94 2e-18
UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1; Ca... 94 2e-18
UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;... 93 3e-18
UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30; ... 93 4e-18
UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2; ... 91 1e-17
UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel prot... 91 2e-17
UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putativ... 91 2e-17
UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel prot... 90 3e-17
UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17; P... 90 4e-17
UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3 fam... 89 7e-17
UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultu... 89 9e-17
UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10; S... 89 9e-17
UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10; ... 88 1e-16
UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1; Dicheloba... 88 2e-16
UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1; T... 88 2e-16
UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1; ... 88 2e-16
UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase; ... 88 2e-16
UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Ther... 87 2e-16
UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1; Thiomicro... 87 2e-16
UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4; B... 87 3e-16
UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1; ... 87 3e-16
UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1; ... 87 4e-16
UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1; C... 86 5e-16
UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7; B... 86 7e-16
UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21; C... 85 1e-15
UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214; ... 85 2e-15
UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter ... 84 3e-15
UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 fami... 84 3e-15
UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2; Cy... 83 4e-15
UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3; ... 83 4e-15
UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR - Lepto... 83 5e-15
UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3; Mo... 82 1e-14
UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1; Desu... 82 1e-14
UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2; Sinor... 82 1e-14
UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 fami... 81 1e-14
UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1; ... 81 2e-14
UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2; Proteob... 81 2e-14
UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine... 81 2e-14
UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative... 81 2e-14
UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel prot... 80 3e-14
UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4; Lept... 80 4e-14
UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2; ... 80 4e-14
UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231; ... 80 4e-14
UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 fami... 79 1e-13
UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1; ... 79 1e-13
UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protei... 78 2e-13
UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,... 78 2e-13
UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel prot... 77 2e-13
UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9; Magnoliop... 77 2e-13
UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6; Ga... 77 2e-13
UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=... 77 2e-13
UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2; ... 77 3e-13
UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: Ni... 76 7e-13
UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protei... 76 7e-13
UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase; ... 76 7e-13
UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22; Alph... 75 9e-13
UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n... 75 9e-13
UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;... 75 9e-13
UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, wh... 75 9e-13
UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5; Firm... 75 1e-12
UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 fami... 75 1e-12
UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase; ... 75 1e-12
UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;... 74 2e-12
UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4; Legio... 74 2e-12
UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2; ... 74 3e-12
UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1; Petr... 74 3e-12
UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2; ... 74 3e-12
UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel prot... 73 4e-12
UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel prot... 73 4e-12
UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 fami... 73 4e-12
UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2; Meth... 73 4e-12
UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;... 73 4e-12
UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3; ... 73 4e-12
UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2; ... 73 5e-12
UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of s... 73 5e-12
UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1; Ostr... 72 9e-12
UniRef50_Q5LQV9 Cluster: TRNA-dihydrouridine synthase A; n=46; B... 72 1e-11
UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 72 1e-11
UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Re... 71 2e-11
UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1... 71 2e-11
UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to tRNA-dihyd... 71 2e-11
UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep: Lm... 71 2e-11
UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly d... 71 2e-11
UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep: CG14... 71 3e-11
UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1; Sacc... 70 4e-11
UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4; Desu... 70 4e-11
UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1; ... 69 8e-11
UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase; ... 69 1e-10
UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1; Poly... 69 1e-10
UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8; Pr... 68 1e-10
UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase; ... 68 2e-10
UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel prot... 67 3e-10
UniRef50_Q7XWZ9 Cluster: OSJNBa0079F16.4 protein; n=8; Oryza sat... 67 3e-10
UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;... 67 3e-10
UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel prot... 66 4e-10
UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7; Chlamydi... 66 6e-10
UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN f... 66 8e-10
UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2; Beta... 66 8e-10
UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1; ... 66 8e-10
UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly d... 66 8e-10
UniRef50_UPI0000DAE45A Cluster: hypothetical protein Rgryl_01000... 65 1e-09
UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;... 65 1e-09
UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1; Di... 65 1e-09
UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3; ... 65 1e-09
UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3; Alte... 65 1e-09
UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1; ... 65 1e-09
UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;... 65 1e-09
UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=2... 64 2e-09
UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1; ... 64 2e-09
UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1... 64 2e-09
UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase; ... 63 4e-09
UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep... 63 4e-09
UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase; ... 63 4e-09
UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8; Pr... 63 5e-09
UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781 p... 62 7e-09
UniRef50_Q9FI41 Cluster: Emb|CAB87804.1; n=7; Magnoliophyta|Rep:... 62 7e-09
UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella ve... 62 9e-09
UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of str... 62 1e-08
UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;... 62 1e-08
UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase; ... 62 1e-08
UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA... 61 2e-08
UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;... 61 2e-08
UniRef50_Q013U5 Cluster: CG3645-PB, isoform B; n=1; Ostreococcus... 61 2e-08
UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI; ... 60 3e-08
UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8; P... 60 3e-08
UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep: CG1046... 60 3e-08
UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;... 59 7e-08
UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1; ... 58 1e-07
UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4; Bifid... 58 2e-07
UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 58 2e-07
UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2; un... 58 2e-07
UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2... 58 2e-07
UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4; Therm... 57 3e-07
UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;... 57 3e-07
UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1; Bu... 57 4e-07
UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2; Prot... 57 4e-07
UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3; Prot... 56 5e-07
UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4; M... 56 5e-07
UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2; ... 56 5e-07
UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07
UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7; Sa... 56 5e-07
UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26; P... 56 6e-07
UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain co... 56 8e-07
UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;... 55 1e-06
UniRef50_Q9LY64 Cluster: Putative uncharacterized protein MAA21_... 55 1e-06
UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 fami... 54 2e-06
UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase, put... 54 3e-06
UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory p... 54 3e-06
UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4; Ne... 54 3e-06
UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779... 53 4e-06
UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel prot... 53 4e-06
UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12... 53 4e-06
UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 53 4e-06
UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO249... 53 6e-06
UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1; Marin... 53 6e-06
UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domai... 53 6e-06
UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 52 1e-05
UniRef50_Q012U0 Cluster: Nitrogen regulation family protein; n=2... 51 2e-05
UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3; ... 51 2e-05
UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein NCU031... 51 2e-05
UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;... 51 2e-05
UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;... 51 2e-05
UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1; P... 50 3e-05
UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7; Desu... 50 3e-05
UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1; Chro... 50 4e-05
UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 50 4e-05
UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3; ... 50 5e-05
UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2; Endopterygota|... 50 5e-05
UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2; ... 50 5e-05
UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to tRNA-dihyd... 49 7e-05
UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus lu... 49 7e-05
UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2; ... 49 7e-05
UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1; Desu... 49 9e-05
UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5; Bacteri... 48 1e-04
UniRef50_Q2NEG1 Cluster: PyrD; n=1; Methanosphaera stadtmanae DS... 48 1e-04
UniRef50_A6PMB8 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 48 2e-04
UniRef50_A0Z3E6 Cluster: Dihydroorotate dehydrogenase/oxidoreduc... 48 2e-04
UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase; ... 48 2e-04
UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5; Al... 48 2e-04
UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein Y37E11... 47 3e-04
UniRef50_Q5CG46 Cluster: Uncharacterized protein family UPF0034;... 47 3e-04
UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;... 46 5e-04
UniRef50_Q8SUY1 Cluster: Putative uncharacterized protein ECU07_... 46 5e-04
UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aede... 46 7e-04
UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118; ... 46 7e-04
UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225... 46 9e-04
UniRef50_A7DP74 Cluster: Dihydroorotate dehydrogenase family pro... 45 0.001
UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia... 45 0.002
UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putativ... 44 0.002
UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase; ... 42 0.014
UniRef50_A0RV22 Cluster: Dihydroorotate dehydrogenase; n=1; Cena... 41 0.019
UniRef50_Q9V0Y6 Cluster: Dihydroorotate dehydrogenase; n=8; Eury... 41 0.019
UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2; Gammapr... 40 0.033
UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putativ... 40 0.033
UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4; Ther... 40 0.033
UniRef50_Q12882 Cluster: Dihydropyrimidine dehydrogenase [NADP+]... 40 0.043
UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5; ... 40 0.057
UniRef50_Q8TXU6 Cluster: Dihydroorotate dehydrogenase; n=1; Meth... 40 0.057
UniRef50_UPI0000499494 Cluster: conserved hypothetical protein; ... 39 0.075
UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6; S... 39 0.100
UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia lam... 38 0.13
UniRef50_Q972L2 Cluster: 350aa long hypothetical dihydroorotate ... 38 0.17
UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.23
UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme... 36 0.53
UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain protein-... 36 0.53
UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15... 36 0.53
UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1; ... 36 0.53
UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;... 36 0.70
UniRef50_A7E5J3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.93
UniRef50_Q73P17 Cluster: Dihydroorotate dehydrogenase/oxidoreduc... 35 1.2
UniRef50_Q1G992 Cluster: Dihydroorotate dehydrogenase; n=3; Lact... 35 1.2
UniRef50_Q9LVI9 Cluster: Senescencs-related protein; dihydroorot... 35 1.2
UniRef50_Q4AHG7 Cluster: Dihydrouridine synthase, DuS; n=1; Chlo... 34 2.1
UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1; ... 34 2.1
UniRef50_Q23YG3 Cluster: Dihydroorotate dehydrogenase family pro... 34 2.1
UniRef50_Q9YFI6 Cluster: Dihydroorotate dehydrogenase; n=3; Desu... 34 2.1
UniRef50_P96192 Cluster: tRNA-dihydrouridine synthase C; n=1; Az... 34 2.1
UniRef50_Q89B11 Cluster: Serine acetyltransferase; n=1; Buchnera... 34 2.8
UniRef50_Q8D3M8 Cluster: Transcriptional regulator; n=15; Gammap... 33 3.7
UniRef50_A7RQK6 Cluster: Predicted protein; n=1; Nematostella ve... 33 3.7
UniRef50_UPI0000D9E812 Cluster: PREDICTED: similar to vacuolar p... 33 4.9
UniRef50_A7GWT5 Cluster: NADH oxidase; n=4; delta/epsilon subdiv... 33 4.9
UniRef50_A5W480 Cluster: DSBA oxidoreductase; n=17; Proteobacter... 33 4.9
UniRef50_A6TVN1 Cluster: Nuclease SbcCD, D subunit; n=3; Clostri... 33 6.5
UniRef50_A2EEV5 Cluster: Adenylate and Guanylate cyclase catalyt... 33 6.5
UniRef50_A0CDX9 Cluster: Chromosome undetermined scaffold_17, wh... 33 6.5
>UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:
CG3645-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 505
Score = 255 bits (625), Expect = 5e-67
Identities = 107/160 (66%), Positives = 138/160 (86%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L +P++VVAPMVD SELAWR+LCRR+GA LCY+PM H+N+F D KYRKD L TC EDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
LI+QFCGN+ + + AA LA+++CDA+DINLGCPQ+IAKRG YGSFLQD+WELL EIV+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 467 MSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ +++P+TCK+RIFED++K++ YAKMLEA+GC+LLTVH
Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVH 184
>UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=20;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 1-like -
Homo sapiens (Human)
Length = 473
Score = 244 bits (598), Expect = 9e-64
Identities = 106/166 (63%), Positives = 132/166 (79%), Gaps = 2/166 (1%)
Frame = +2
Query: 95 WIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV--T 268
W L + VVAPMVD SELAWRLL RRHGA LCYTPMLH+ VF +DA YRK+NL
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
C EDRPLIVQFC N+PE+ AA LA++YCDAID+NLGCPQ IAKRG YG+FLQD+W+LL
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 449 KEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ ++ + +S+P+TCK+R+F +IDK+V YA+MLE +GC+LLTVH
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVH 175
>UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Novel
protein - Mus musculus (Mouse)
Length = 194
Score = 215 bits (526), Expect = 5e-55
Identities = 100/166 (60%), Positives = 125/166 (75%), Gaps = 2/166 (1%)
Frame = +2
Query: 95 WIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV--T 268
W L + VVAPMVD SELAWRLL RRHGA LCYTPMLH+ VF +DA YRK+NL
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
C EDRPLIVQ AA LA++YCDAID+NLGCPQ IAKRG YG+FLQ++W+LL
Sbjct: 70 CPEDRPLIVQ-----------AALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 118
Query: 449 KEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ ++ + +S+P+TCK+R+F +IDK+V YA+MLE +GC+LLTVH
Sbjct: 119 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVH 164
>UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14784,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 505
Score = 175 bits (426), Expect(2) = 6e-55
Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT--CEEDRPLIVQFCGN 310
MVD SELAWRLL RRHGA LCYTPM H+ VF +DA YR+DNL CEEDRPLI QFC N
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLITQFCAN 60
Query: 311 NPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
+PE+ AA LA++YCDAID+NLGCPQ IAKRG YG+FLQD+W LL+++
Sbjct: 61 DPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWGLLEKM 109
Score = 61.7 bits (143), Expect(2) = 6e-55
Identities = 24/43 (55%), Positives = 37/43 (86%)
Frame = +2
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
V S+ +S+PITCK+R+F++++K+V YA+MLE +GC+LLTVH
Sbjct: 146 VRLASEKLSVPITCKIRVFKEMEKTVRYAQMLEKAGCQLLTVH 188
>UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep:
Gb|AAF51525.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 423
Score = 211 bits (516), Expect = 8e-54
Identities = 89/166 (53%), Positives = 125/166 (75%)
Frame = +2
Query: 89 ANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
A+W +L P+++VAPMVD SEL +RLLC+++GA YTPMLHS +FT+ KYR T
Sbjct: 80 AHWK-KLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTT 138
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
C+EDRPL VQFC N+P+ + AAK E YCD +DINLGCPQ IA+RG YG+FL D+ L+
Sbjct: 139 CKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 198
Query: 449 KEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
K +V +++ +++P++CK+RIF +++ ++ YAKMLE +GC LL VH
Sbjct: 199 KSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVH 244
>UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 423
Score = 207 bits (505), Expect = 2e-52
Identities = 88/164 (53%), Positives = 123/164 (75%), Gaps = 3/164 (1%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEE-- 277
++ P +VAPMVD SELAWR+L RR+GA L YTPMLH+ +F KYR+DN + +
Sbjct: 25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84
Query: 278 -DRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
DRPL+VQFC N+PE + +AAKL E+ CDA+D+NLGCPQ IAK+G YGSFL ++W+L+
Sbjct: 85 VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
++ + K + +P+T K+RIF+D +KS+NYAKM+ +G + LTVH
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVH 188
>UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 399
Score = 205 bits (500), Expect = 7e-52
Identities = 88/163 (53%), Positives = 122/163 (74%), Gaps = 2/163 (1%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKD--NLVTCEE 277
++ P+ ++APMVD SEL WR+L RR GA+LCY+PM HS +F + YR + T E
Sbjct: 14 KIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPE 73
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
+RPLI+QFCGN+PEIM AAK+A YCDA+D+NLGCPQ IAK+G+YGSFLQ++W L++ I
Sbjct: 74 ERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESI 133
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+T + +SIP+T K+RIF D K+++YAKM+ +G +L VH
Sbjct: 134 ITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVH 176
>UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 307
Score = 198 bits (482), Expect = 1e-49
Identities = 79/160 (49%), Positives = 119/160 (74%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L NP++ VAPMVD SELA+R LC+R+GA L YTPM+H+ +F + KYR++ T DRP
Sbjct: 13 LGNPRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTSTRDRP 72
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
L+ QFC N+PEI+ AA + YCD +DIN GCPQ IAKRG YG+FL DDW+ ++ ++
Sbjct: 73 LLAQFCANDPEILLRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRK 132
Query: 467 MSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ + + +P+T K+R+++D++ ++ YAKM+EA+G +++ VH
Sbjct: 133 LDEELPVPVTAKIRVYDDLETTLKYAKMVEAAGAQIVAVH 172
>UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein
ECU07_1610; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1610 - Encephalitozoon
cuniculi
Length = 341
Score = 193 bits (471), Expect = 2e-48
Identities = 82/163 (50%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDN--LVTCEE 277
E+ P F VAPMV SE AWR L +RHGAN+ YT M+H + F + ++ N T E
Sbjct: 7 EIQRPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTSEG 66
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
DRPL+VQ CGN+PE+M AA + +++CDAID+N GCPQ +A++G YG++LQ++W+L EI
Sbjct: 67 DRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEI 126
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
V +S +++P+ CK+R+F I+K+V YAKM+E +GC LL VH
Sbjct: 127 VKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVH 169
>UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 435
Score = 191 bits (465), Expect = 1e-47
Identities = 83/160 (51%), Positives = 114/160 (71%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L +P+ VAPMVD + LA+R+LCR++GA++ YTPM HS F YR+D TC EDRP
Sbjct: 49 LKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRP 108
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
L+VQFCGN PE + AAK E++CDAID+NLGCPQ IA+RG YGSFL D ++ IV
Sbjct: 109 LVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQE 168
Query: 467 MSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ K + +PI CK+R+ ++D ++ A L+ +GC+LLT+H
Sbjct: 169 LHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIH 208
>UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=4; Intramacronucleata|Rep:
Chromosome undetermined scaffold_94, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 186 bits (452), Expect = 4e-46
Identities = 77/173 (44%), Positives = 122/173 (70%), Gaps = 2/173 (1%)
Frame = +2
Query: 74 NNYIMANWIF--ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKY 247
+++I W F L +P+F+ APMVD SELA+R+L R++G L YTPMLHS + T+ Y
Sbjct: 2 DDHIQQAWQFYKSLGSPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSY 61
Query: 248 RKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFL 427
+ + TC EDRPL Q CG++P+++ AA + ++ CDAIDINLGCPQ IA++G YG++L
Sbjct: 62 KDEFFTTCPEDRPLFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYL 121
Query: 428 QDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ E + IV + + +++P+TCK+R+F+D ++++ K ++ +GC +LTVH
Sbjct: 122 LEKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVH 174
>UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 527
Score = 180 bits (437), Expect = 3e-44
Identities = 79/166 (47%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Frame = +2
Query: 95 WIFELNNPQF--VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
W L N + V+APMVD SELA+R+ R++GA L +TPM+H+++F D YR+++L
Sbjct: 64 WKETLENQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLAL 123
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
+ DRPL+VQFC N + +A +L E+ CD +D+NLGCPQ +AKRGRYGS+LQD+ +L+
Sbjct: 124 VKADRPLVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLI 183
Query: 449 KEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
E+V+A+ +PI+CK+R+ +D ++V YAK L +G +LTVH
Sbjct: 184 CEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVH 229
>UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=2;
Cryptosporidium|Rep: Dus1p, tRNA dihydrouridine synthase
- Cryptosporidium parvum Iowa II
Length = 409
Score = 179 bits (436), Expect = 4e-44
Identities = 79/168 (47%), Positives = 121/168 (72%), Gaps = 3/168 (1%)
Frame = +2
Query: 92 NWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTC 271
NW L +P+ V+APMVD SELA+RL+C+++G +L Y+PM HS +F+K YR+ N TC
Sbjct: 11 NWKNVLKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTC 70
Query: 272 EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
EED P+IVQFCGN+PE + A+K ++ IDIN GCPQ+IAKRG YG+FL + +L++
Sbjct: 71 EEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLME 130
Query: 452 EIVTAMSKA-VSIPITCKVRIFE--DIDKSVNYAKMLEASGCKLLTVH 586
I++ +S++ + P++CK+RI + D+ ++N K LE++G ++ VH
Sbjct: 131 RIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVH 178
>UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 339
Score = 174 bits (423), Expect = 1e-42
Identities = 78/162 (48%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE-ED 280
+L NPQ ++APMVD S+L +R+L RRHG NLCYTPM+ S +F + YR + + + + ++
Sbjct: 18 KLGNPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPKE 77
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
+P+I+Q G++ MA AK + YCDAIDINLGCPQ IA++G YG++L D++ KEIV
Sbjct: 78 QPIIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 137
Query: 461 TAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
A+ +AV+IP+ CKVR+FED +K++ + +ML+ G + VH
Sbjct: 138 NAVIEAVNIPVYCKVRVFEDEEKTMRFVEMLQECGIWGIAVH 179
>UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;
n=1; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 610
Score = 172 bits (418), Expect = 6e-42
Identities = 97/204 (47%), Positives = 129/204 (63%), Gaps = 44/204 (21%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCR-----------------------RH--GANLCYTPM 211
+ +P+FVVAPMVD SELAWRLL R RH GA++CYTPM
Sbjct: 49 IGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVCYTPM 108
Query: 212 LHSNVFTKDAKY---RKDNLVTC----EE------------DRPLIVQFCGNNPEIMASA 334
+H+ VF DAK R + C EE DRPLIVQFC N+P+I+ +A
Sbjct: 109 IHAKVFV-DAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAA 167
Query: 335 AKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIF 514
AK E CDA+DIN GCPQ IAKRG YGSFLQD+WEL+ ++++ + + +S+P+T K RIF
Sbjct: 168 AKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKFRIF 227
Query: 515 EDIDKSVNYAKMLEASGCKLLTVH 586
D+DK++ YA+M+EA+G ++LT H
Sbjct: 228 PDLDKTIAYARMMEAAGAQILTCH 251
>UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 527
Score = 169 bits (412), Expect = 3e-41
Identities = 83/198 (41%), Positives = 128/198 (64%), Gaps = 31/198 (15%)
Frame = +2
Query: 86 MANWIF--ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFT------KDA 241
M +W F + +P+ VVAPMVD SELAWR+L RR+G++L YTPM+++ +F K
Sbjct: 37 MGSWEFYRSIGSPRRVVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKKV 96
Query: 242 KYRKDN----------------LVTCE-------EDRPLIVQFCGNNPEIMASAAKLAEE 352
KY++ N L++ E DRPL VQFC N+PE + AAK+ E+
Sbjct: 97 KYQEVNFNREHAEEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVED 156
Query: 353 YCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKS 532
CDA+D+NLGCPQ IA+RG YGS+L +DW L+ ++ + + +P+T K+R++E ++K+
Sbjct: 157 RCDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMRVYESVEKT 216
Query: 533 VNYAKMLEASGCKLLTVH 586
+ YA++LE +G +++TVH
Sbjct: 217 ITYARLLERAGAQIITVH 234
>UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;
Babesia bovis|Rep: Dihydrouridine synthase, putative -
Babesia bovis
Length = 355
Score = 167 bits (405), Expect = 2e-40
Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 2/162 (1%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
+ P++V APMV+ SEL +RLLCRR+ +L YTPMLH +F ++ KYR + T ++DRP
Sbjct: 9 IGRPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRP 68
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
LI Q CG++ + AA+L + + A+D+NLGCPQ+IAK G YGSFL D+ +L+ IV+
Sbjct: 69 LIAQVCGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSR 128
Query: 467 MSKAVSIPITCKVRIF--EDIDKSVNYAKMLEASGCKLLTVH 586
+++ V I +TCK+R + + ++N LE SGCK LTVH
Sbjct: 129 VTREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVH 170
>UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative;
n=2; Trypanosoma cruzi|Rep: Dihydrouridine synthase
(Dus), putative - Trypanosoma cruzi
Length = 548
Score = 119 bits (286), Expect(2) = 3e-39
Identities = 48/105 (45%), Positives = 75/105 (71%)
Frame = +2
Query: 272 EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
E D PL VQFCGN+ + + +AA+ E+ C+A+D+NLGCPQ IA+RG YGSFL +DW+ +
Sbjct: 177 ETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGIARRGHYGSFLMEDWDRVH 236
Query: 452 EIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
I+ ++ + +P+T K+R+F+D ++ YA+ML +G +L VH
Sbjct: 237 NILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGIAVLCVH 281
Score = 65.7 bits (153), Expect(2) = 3e-39
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYR 250
P +VV PMVD SEL +R+LCRR+GA L Y+PMLH+ F + A+YR
Sbjct: 96 PMYVVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYR 140
>UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;
n=5; Plasmodium|Rep: tRNA-dihydrouridine synthase,
putative - Plasmodium vivax
Length = 340
Score = 162 bits (394), Expect = 5e-39
Identities = 72/162 (44%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
++ P+ ++APMVD SELA+RLLCR + +L +TPMLH+ F + KYRK +CE+D
Sbjct: 22 QIGKPKHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQSCEKDE 81
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT 463
P+I QFCGNN +I+ +A + + +A+D+NLGCPQ IAK+G YG+FL + + +V+
Sbjct: 82 PVIAQFCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLQKHDEVVNLVS 141
Query: 464 AMSKAVSIPITCKVR-IFEDIDKSVNYAKMLEASGCKLLTVH 586
++ +IPITCK+R I +D K++N L++ K++TVH
Sbjct: 142 DITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVH 183
>UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07217.1 - Gibberella zeae PH-1
Length = 510
Score = 161 bits (391), Expect = 1e-38
Identities = 76/179 (42%), Positives = 116/179 (64%), Gaps = 19/179 (10%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCR------RHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
+ +P+F+VAPMVD SE AWR+L R + L YTPMLH+ +F++D KYRK +
Sbjct: 25 IGSPKFIVAPMVDQSEFAWRMLTRSFISPTEQKSLLAYTPMLHARLFSQDDKYRKAHFQA 84
Query: 269 CEE-------------DRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRG 409
+ DRPL VQFC N+P+ + SAAK YCDA+D+NLGCPQ IA++G
Sbjct: 85 VKTDGETPWLDGNPSIDRPLFVQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKG 144
Query: 410 RYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+YG+FLQ+D +L+ ++ + K + +P+T K+RI + ++++ YA+ + +G +LTVH
Sbjct: 145 KYGAFLQEDQDLIFRLINILHKELPVPVTAKIRILDTKEETLAYAQNVLKAGASILTVH 203
>UniRef50_Q7RX85 Cluster: Putative uncharacterized protein
NCU00065.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU00065.1 - Neurospora crassa
Length = 629
Score = 154 bits (374), Expect = 1e-36
Identities = 80/190 (42%), Positives = 114/190 (60%), Gaps = 30/190 (15%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCR------RHGANLCYTPMLHSNVFTKDAKYRKDNL-- 262
+ +P+++VAPMVD SE AWR+L R LCYTPM H+ +FT+ KYR +
Sbjct: 47 IGSPKYIVAPMVDQSEFAWRMLTRSFLPADEQHKLLCYTPMFHARLFTEAPKYRDSHFQP 106
Query: 263 ----VTCEEDRP------------------LIVQFCGNNPEIMASAAKLAEEYCDAIDIN 376
+T + RP L VQFC N+P + SAAKL YCDA+D+N
Sbjct: 107 IRGPLTADSPRPDSSDYVPFLDGNPEFDRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLN 166
Query: 377 LGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLE 556
LGCPQ IAKRG+YGSFLQ++ EL+ E++ + K + IP+T K+RI + + ++ YA+ +
Sbjct: 167 LGCPQGIAKRGQYGSFLQENQELIFELINTLHKELDIPVTAKIRILDTKEATLKYAQNVL 226
Query: 557 ASGCKLLTVH 586
+G +LTVH
Sbjct: 227 RAGASILTVH 236
>UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 464
Score = 150 bits (363), Expect = 3e-35
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 19/177 (10%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCR------RHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
L +P+++VAPMVD SE AWR+L R L Y+PM H+ +F++ KYR +
Sbjct: 33 LGSPKYIVAPMVDQSEFAWRMLSRSFLPESEQSGLLAYSPMFHARLFSESQKYRDQHFQP 92
Query: 269 ----CEE---------DRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRG 409
C++ DRP VQFC N+P+ + +AAK+A YCDA+D+NLGCPQ IAK+G
Sbjct: 93 TKPDCDKLYLDGNPAIDRPFFVQFCANDPQALLNAAKIAAPYCDAVDLNLGCPQGIAKKG 152
Query: 410 RYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLT 580
YGSFLQ+D +L+ +++ + + + IP+T K+RI E + ++ YA+ + +LT
Sbjct: 153 HYGSFLQEDQDLIHQLIKILHENLDIPVTAKIRILETKEATLKYAQNVLRPTASILT 209
>UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 359
Score = 145 bits (352), Expect = 6e-34
Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Frame = +2
Query: 74 NNYIMANWIF--ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKY 247
+N M W F +N+P+F+VAPMVD SEL +RLLCRR+ A+L YTPMLH+ +F+++ Y
Sbjct: 10 SNVRMDPWSFWKSINSPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENY 69
Query: 248 RKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFL 427
R + T +D+PLI QFCGN+P A+ + AIDINLGCPQ IAK+GRYGSFL
Sbjct: 70 RNIHFHTSSDDKPLIAQFCGNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFL 129
Query: 428 QDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ +++T +V R + + + +A+GCK LTVH
Sbjct: 130 LE----YPQLITKGFASVDTKFMLFTRGW------LFSVQSCQANGCKALTVH 172
>UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,
putative; n=9; Pezizomycotina|Rep: Dihydrouridine
synthase family protein, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 541
Score = 141 bits (341), Expect = 1e-32
Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 33/193 (17%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASEL----------AWRLLCRRHGAN------LCYTPMLHSNVFTKD 238
L +P+++VAPMVD SE AWR+L R L Y+PM H+ +F +
Sbjct: 34 LGSPKYIVAPMVDRSEFRIRTNHSISQAWRMLTRSFMPPDDPKPILAYSPMYHARLFREQ 93
Query: 239 AKYR-------------KDNLVTCEE----DRPLIVQFCGNNPEIMASAAKLAEEYCDAI 367
A R DN + + DRPLIVQFC N+P+ AA+ YCDA+
Sbjct: 94 ANVRWQHFQPTRAGLDKNDNSLYLDGNPAFDRPLIVQFCANDPDDFLEAARHVAPYCDAV 153
Query: 368 DINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAK 547
D+NLGCPQ IA++G YG+FLQ+DW+L+ +++ + K + IP+T K RI E +K++ YAK
Sbjct: 154 DLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHKELPIPVTAKFRIQESKEKTLEYAK 213
Query: 548 MLEASGCKLLTVH 586
M+ ++G ++T+H
Sbjct: 214 MILSAGASIITLH 226
>UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putative;
n=1; Trypanosoma brucei|Rep: TRNA-dihydrouridine
synthase 1, putative - Trypanosoma brucei
Length = 520
Score = 129 bits (311), Expect = 5e-29
Identities = 53/105 (50%), Positives = 77/105 (73%)
Frame = +2
Query: 272 EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
+ D PL QFCGN+PE + +AA+ E+YC+A+D N+GCPQ IA+RG YGSFL +DWELL
Sbjct: 151 DNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELLH 210
Query: 452 EIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
I+ A++ + +P+T K+RIF+D ++ YA+ML +G +L VH
Sbjct: 211 NILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVH 255
>UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;
Trichomonas vaginalis G3|Rep: Dihydrouridine synthase,
putative - Trichomonas vaginalis G3
Length = 318
Score = 126 bits (303), Expect = 5e-28
Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 11/175 (6%)
Frame = +2
Query: 95 WIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE 274
W + +APM + S+L+WR+L R HG +C+T ML+++ +++ + Y+ TC
Sbjct: 11 WWKKFGEKPICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNTCP 70
Query: 275 EDRPLIVQFCGNN--PEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDW--- 439
ED PLI Q G+N +++ +AAK +Y D +D+NLGC Q IA R YG F+ D+
Sbjct: 71 EDHPLIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDNCQKR 130
Query: 440 ELLKEIVTAMSKAVSIPITCKVRIFED-----IDK-SVNYAKMLEASGCKLLTVH 586
E E+ + K V+ PI K+RIF D +K ++++AK LE +G LL VH
Sbjct: 131 EKTLELFRRLCKEVNCPICAKIRIFIDDSGEVSEKITIDFAKKLEEAGVSLLQVH 185
>UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 321
Score = 120 bits (290), Expect = 2e-26
Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 9/162 (5%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+APMV+ ++A+R+LC RHG ++C+T M++ + + + YR+ + EEDRPL++Q G
Sbjct: 17 LAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQQIEYSEEDRPLVIQISG 76
Query: 308 NNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT---AMSKA 478
+ + + AK E+ IDINLGC Q +AKRG YG F+ D + + +V ++
Sbjct: 77 SIDVDLLTTAKSMSEFGVPIDINLGCCQKVAKRGEYGYFMVDSEQKRQNVVNLIKSIPSE 136
Query: 479 VSIPITCKVRIFED------IDKSVNYAKMLEASGCKLLTVH 586
+++P+ K+R D I +V++AK LE +G L+T+H
Sbjct: 137 ITVPLYVKIRALTDESGIPSIPITVDFAKHLEEAGASLITIH 178
>UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=28;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 4-like -
Homo sapiens (Human)
Length = 317
Score = 118 bits (285), Expect = 8e-26
Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
V APMV S+LA+R L R++ +LCYTPM+ + F K K R T + D PLIVQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
N+ +++ AA++ Y + IDIN GCPQ A YG+ L + EL++++V + V
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 485 IP---ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
P ++ K+RI +D+ ++V+ + EA+G +TVH
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVH 186
>UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to MGC79829 protein - Nasonia vitripennis
Length = 346
Score = 115 bits (277), Expect = 7e-25
Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
Frame = +2
Query: 107 LNNPQF--VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
L PQ V APMV S+L +R L R++ ++C+TPM+ ++ F + +K R T E D
Sbjct: 9 LTGPQMTKVCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGD 68
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
PLIVQF + A ++ Y + +D+N GCPQ A + YG+ L +L+KE+V
Sbjct: 69 SPLIVQFAAKEVDDFVEATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELV 128
Query: 461 TAMSKAVSIPIT--CKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ + + P T K+RI +DI K++ +++ +E +G LTVH
Sbjct: 129 SNVRNRIPKPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVH 172
>UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 322
Score = 113 bits (273), Expect = 2e-24
Identities = 57/169 (33%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L V+AP + ++LA+R+L R++ LC+T M++S+++ R TC +DRP
Sbjct: 13 LGEVPIVLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRNSYFQTCSQDRP 72
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLK---EI 457
LI+Q GN+ + + AK +++ IDIN GC Q IA+RG+YG F+ ++ K E+
Sbjct: 73 LIIQMSGNDESELIACAKDLQQFAVGIDINCGCTQHIARRGQYGYFMVNNENKRKNVIEM 132
Query: 458 VTAMSKAVSIPITCKVRIFE------DIDKSVNYAKMLEASGCKLLTVH 586
V + ++++P++ K R+ + D+D + +AK LE +G L++VH
Sbjct: 133 VKNIVASINVPLSIKFRLIDGEDGKPDVDITCKFAKELEDAGVSLISVH 181
>UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 344
Score = 111 bits (267), Expect = 1e-23
Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Frame = +2
Query: 92 NWIFELNNPQF--VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV 265
N + +N+ +F + APMV S L +R+L ++ G ++ YTPM+ + F + R +
Sbjct: 45 NLMDRINSGEFMKIQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFT 104
Query: 266 TCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWEL 445
+ D PLIVQF NN E + SAA+ ++YC IDIN GCPQ + +G+ L E
Sbjct: 105 INKLDEPLIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLHPER 164
Query: 446 LKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ ++V ++ V IPI+ K+R+ D+ ++ AK E G +TVH
Sbjct: 165 IYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVH 211
>UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to
dihydrouridine synthase 4-like; n=3; Coelomata|Rep:
PREDICTED: similar to dihydrouridine synthase 4-like -
Tribolium castaneum
Length = 451
Score = 106 bits (255), Expect = 3e-22
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+ APMV S+L +R L + + +LCYTPM+ ++ F K K R + T D PLI QF
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMNDTPLITQFA 86
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
N AA + +CD +D+N GCPQ AK G + + E++ ++V +
Sbjct: 87 ANKVYDFVGAAYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLEKPEVIYDLVKQCRNVIP 146
Query: 485 IPIT--CKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
P T K+R+ +D+ +SV + LE G LTVH
Sbjct: 147 KPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVH 182
>UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep:
NifR3-like protein - Methanosarcina mazei
(Methanosarcina frisia)
Length = 323
Score = 106 bits (255), Expect = 3e-22
Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++APM D + LA+RLLCRR+GA+L YT M++ + +++ ++ EEDRP VQ
Sbjct: 18 LLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEEDRPFGVQLV 77
Query: 305 GNNPEIMASAAK-LAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G P+ + AA + EEY + ID+N+GCP GS L + EL+ I+ ++++
Sbjct: 78 GGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYSIILELTES 137
Query: 479 VSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ P++ K+R+ +K++ A+++E +G +TVH
Sbjct: 138 LDTPVSAKIRLLGREEKTLEIARLIEKAGASAVTVH 173
>UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine
synthase-like protein C45G9.2; n=2; Caenorhabditis|Rep:
Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2 - Caenorhabditis elegans
Length = 284
Score = 106 bits (254), Expect = 4e-22
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 3/153 (1%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNP 316
MV S+LA+R L R + ++C+TPM+++ F + K R L CE D PLIVQF ++P
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 317 EIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIP-- 490
+++ AA++ + +D+N GCP+ + +GS L ELL ++V + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 491 -ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
++ K+RI DI+K+V+ + EA+G LTVH
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVH 153
>UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;
Chlorobiaceae|Rep: TIM-barrel protein, nifR3 family -
Chlorobium tepidum
Length = 352
Score = 105 bits (251), Expect = 1e-21
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+++ P ++APM D ++ A+R LC++HGA++ YT + + + + + + +R
Sbjct: 12 DIDRP-IILAPMEDVTDRAFRQLCKQHGADIVYTEFISAEALRRGVEKSIRKITVADHER 70
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P+ VQ GN E M AA +AE Y D +DIN GCP + +A RG G+ L + E L EI
Sbjct: 71 PVAVQIFGNTVESMVEAAAIAETYEPDYLDINFGCPVKKVAGRGA-GAALLKEPEKLSEI 129
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKSVNY---AKMLEASGCKLLTVH 586
+A+ AVS+P+T K RI D D S+N + LE +G + + VH
Sbjct: 130 ASAVVNAVSLPVTAKTRIGWDHD-SINITDTVRRLEDAGIRAVAVH 174
>UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3;
Bacteroidales|Rep: Putative TIM-barrel enzyme -
Bacteroides fragilis
Length = 324
Score = 103 bits (248), Expect = 2e-21
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 4/165 (2%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L +APM D ++ A+RL+C++ GA++ YT + S+ + L C+E+R
Sbjct: 7 DLGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 284 PLIVQFCGNNPEIMASAAKLAEE-YCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P+ +Q G + E M AA++ EE D +DIN GCP + +A +G LQ+ ++L EI
Sbjct: 67 PVAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQNIPKML-EI 125
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
A+ AV IP+T K R+ D D V+ A+ L+ G L +H
Sbjct: 126 TRAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIH 170
>UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 103 bits (246), Expect = 4e-21
Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Frame = +2
Query: 83 IMANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPM----------------- 211
++ N L + + APMV S+LA+RL ++GA L +T M
Sbjct: 1 MIVNHKLPLESLLYCAAPMVGQSDLAFRLQTVQNGATLTWTQMYLAPELSSDQYMLESLL 60
Query: 212 ----LHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINL 379
+ SN A+YR L ++ P +VQ GNN + + AA+ Y DAID+NL
Sbjct: 61 KSLEMGSNATKNMARYRASPLH--DQSAPQVVQLAGNNVQQLVEAARRVAPYADAIDLNL 118
Query: 380 GCPQSIAKRGRYGSFL--QDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKML 553
GCPQ A++G YG+ L + +W L+ EIV+ M +AV +PIT K+R+ +++ A ML
Sbjct: 119 GCPQRHAEQGHYGACLLPKQNWPLVAEIVSGMVQAVDVPITTKIRLPVPKEQTAQLAVML 178
Query: 554 EASGCKLLTVH 586
+G L+TVH
Sbjct: 179 AHAGSSLVTVH 189
>UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;
n=2; Deltaproteobacteria|Rep: Dihydrouridine synthase
family protein - Geobacter sulfurreducens
Length = 325
Score = 100 bits (240), Expect = 2e-20
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++APM + L +RLL R GA LC+T M+ N ++ K + L + DRPL +Q
Sbjct: 17 ILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQLF 76
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
G++P++M A + Y D IDIN+GCP GS L + + ++ IV A+ +A
Sbjct: 77 GDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRATR 136
Query: 485 IPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
+P+T K+R + + + A++ E GC +T+H
Sbjct: 137 LPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLH 172
>UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3 precursor; n=2; delta proteobacterium MLMS-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3
precursor - delta proteobacterium MLMS-1
Length = 313
Score = 100 bits (240), Expect = 2e-20
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
P V AP+ S+L +RLLCR +GA LCY+ ML + + + L T +RPL++
Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLM 72
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAM 469
Q G PE+M AA + D IDIN+GCP + + K+G G+ L D EL I A+
Sbjct: 73 QLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGA-GAALMRDPELAAAITGAV 131
Query: 470 SKAV-SIPITCKVRIFEDIDKSVN---YAKMLEASGCKLLTVH 586
+ A +P+T K+R + K +N +A++L A G +T+H
Sbjct: 132 TAAAGDLPVTVKIRSGWN-HKQINAPDFARLLVAHGAAAVTIH 173
>UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep:
CG10495-PA - Drosophila melanogaster (Fruit fly)
Length = 396
Score = 100 bits (239), Expect = 3e-20
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
V APMV S+L +R L R +G L +TPM+ S+ K R++ T +D+PLI QF
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFA 85
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV- 481
+P ++A+L Y D ID+N GCPQS A YG + EL+ ++V + + +
Sbjct: 86 AKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLP 145
Query: 482 -SIPITCKVRIF---EDIDKSVNYAKMLEASGCKLLTVH 586
++ K+R+ E + ++++ A+ LE++G LT+H
Sbjct: 146 GDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLH 184
>UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 326
Score = 99.1 bits (236), Expect = 7e-20
Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Frame = +2
Query: 98 IFELNN---PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
IFE+N P + APMV S+L +R L R + ++ YTPM+ + F K R + T
Sbjct: 11 IFEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFST 69
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
+ D LI+QF ++P I+ AA+L Y D I IN GCPQ+ A + GS L D+ E +
Sbjct: 70 NDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKV 129
Query: 449 KEIVTAMSKAV--SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
++V A+ + S K+RI +D++K+ + +++E SG ++TVH
Sbjct: 130 HKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVH 177
>UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_49916_51304 - Giardia lamblia
ATCC 50803
Length = 462
Score = 98.7 bits (235), Expect = 9e-20
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Frame = +2
Query: 95 WIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRK---DNLV 265
W +L +P +APMVD SEL +RLL RR+G L +TPM +N +K D L
Sbjct: 10 WYVKLGSPTKGIAPMVDGSELPYRLLTRRYGVELAWTPMHSTNTLVTSSKAMTQLVDELK 69
Query: 266 TCEE-DRPLIVQFCGNNPEIMASA----AKLAEEYC-DAIDINLGCPQSIAKRGRYGSFL 427
E DRPL++Q GNNP A ++ C D +++N+GCPQ++A RG+YG++L
Sbjct: 70 HGESIDRPLVLQLSGNNPSNFELAYNTLVQMGAGCCFDVVELNMGCPQAVALRGKYGAYL 129
Query: 428 QDDWELLKEI------VTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+L +EI VTA S + + K R+ +V L ++G + T+H
Sbjct: 130 MGHLDLAEEILRTLVAVTARS-GLGHKVAVKTRLDISDKDTVKMCLRLCSTGIAMFTLH 187
>UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
TIM-barrel enzyme - Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC11152)
Length = 329
Score = 96.7 bits (230), Expect = 4e-19
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L +APM D +++++RL+C+R GA++ YT + S+ + + L +++R
Sbjct: 7 DLGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDER 66
Query: 284 PLIVQFCGNNPEIMASAAKLAEE-YCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P+ +Q G + M AA++ EE D +DIN GCP + +A +G G+ + + L+ EI
Sbjct: 67 PVAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEI 125
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
+ KAV+IP+T K R+ D D V+ A+ L+ G L++H
Sbjct: 126 TREVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIH 170
>UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_38_15456_16676 - Giardia lamblia
ATCC 50803
Length = 406
Score = 96.7 bits (230), Expect = 4e-19
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGAN-------LCYTPMLHSNVFTKDAKYRKDNLV 265
L ++ APM AS A+R L + H A +T M ++ ++ R L
Sbjct: 48 LAETRYFSAPMTHASGAAFRQLIQGHMAEENERTKYTGFTQMYTADALLHNSPLRDAVLS 107
Query: 266 TCEEDRPLIVQFCGNNPEIMASAAKLAEE-----YCDAIDINLGCPQSIAKRGRYGSFLQ 430
T +I+Q CGNNP +AA+L + A+DINLGCP S A YG ++
Sbjct: 108 TAAPGEKIILQLCGNNPSTFRAAAELLHDSPIASQLVALDINLGCPASCASSKGYGFYVA 167
Query: 431 DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+W L+ +I++ S A P+TCK+R I+K+++Y +L SG +T+H
Sbjct: 168 QNWPLVHQIISETSSARLFPVTCKIRPLNSIEKTIDYMVLLVMSGASGITIH 219
>UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 312
Score = 96.7 bits (230), Expect = 4e-19
Identities = 51/164 (31%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNL--VTCEEDRPLIVQF 301
+APM D ++ ++R LCR++G +LC+T ++++ + K R ++ T + ++ L+VQ
Sbjct: 17 LAPMADVNDYSFRKLCRQNGVSLCWTGFINAHHWVTRTKQRDRDVWFTTRDNEKNLVVQL 76
Query: 302 CGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE---IVTAMS 472
G+N E + S AK E +CD I++N GC A R G FL D + ++ +
Sbjct: 77 LGSNLEELVSCAKDVENFCDMIELNCGCTHCFASRSGCGFFLIDTQKHRDSALILIQNLI 136
Query: 473 KAVSIPITCKVRIFED------IDKSVNYAKMLEASGCKLLTVH 586
K+++ P++ K+R+ D ++++V +A+ LE G L+TVH
Sbjct: 137 KSINKPVSIKIRLISDDNSVPSLERTVKFAQDLERVGVSLITVH 180
>UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Mariprofundus ferrooxydans PV-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Mariprofundus ferrooxydans PV-1
Length = 341
Score = 95.9 bits (228), Expect = 6e-19
Identities = 55/166 (33%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
+ ++NP V+APM ++L +R +C+R G L T M+ S + + +++
Sbjct: 14 YMIDNP-LVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAELGDDE 72
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKE 454
P+ +Q G++PE + AA+ A + D +DIN+GCP + I K+ + L+D+ L+
Sbjct: 73 HPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDE-ALVAR 131
Query: 455 IVTAMSKAVSIPITCKVRI-FEDIDKSV-NYAKMLEASGCKLLTVH 586
++ A+ AV +P+T K+R ++D K+V N A++ E SG +LLTVH
Sbjct: 132 VLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVH 177
>UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Magnetospirillum gryphiswaldense
Length = 335
Score = 95.5 bits (227), Expect = 8e-19
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L NP ++APM +++ R L +R GA L + M+ S + + C E+ P
Sbjct: 16 LPNP-VILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASNCAEEHP 74
Query: 287 LIVQFCGNNPEIMASAAKL-AEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIV 460
+ VQ G PE+MA AA++ A+ IDIN+GCP + +A +G GS L D L +++
Sbjct: 75 MSVQLAGCEPEVMAEAARMNADRGAAIIDINMGCPVKKVAVKGEAGSALMKDEILAGQLM 134
Query: 461 TAMSKAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
A +AV +P+T K R+ D ++ + A++ + SG K++T+H
Sbjct: 135 EATVRAVDVPVTLKCRMGWDHNRLNAPRLARIAQESGIKMVTIH 178
>UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2;
Culicidae|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 391
Score = 95.5 bits (227), Expect = 8e-19
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+ APMV S+L +R L R +G +L +T M+ ++ F + K R + T +D P+I QF
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEFTTNRDDTPVIAQFA 85
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV- 481
N SA ++ Y D +D+N GCPQ A + YGS L EL+ ++++ + + +
Sbjct: 86 AKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLRTPELIADMLSTVRRNLP 145
Query: 482 -SIPITCKVRIFE-DIDKSVNYAKMLEASGCKLLTVH 586
+ ++ KVR+ + + +++ + LEA G +TVH
Sbjct: 146 STFSVSVKVRLLQKSLSATIDMCRQLEACGITFITVH 182
>UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24;
Clostridia|Rep: Nitrogen regulation protein nifR3 -
Clostridium tetani
Length = 322
Score = 94.3 bits (224), Expect = 2e-18
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+AP+ ++LA+R LC+R G L YT M+ + D+ KD L +E+ P+ VQ G
Sbjct: 14 LAPLAGVTDLAFRGLCKRMGCTLVYTEMVSAKALFYDSDKTKDMLRFSKEELPIAVQIFG 73
Query: 308 NNPEIMASAAKL---AEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
P+IMA+ + + + IDIN+GCP I K G GS L + +L +IV ++ K
Sbjct: 74 KEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKNGE-GSALMKNPKLASDIVESIKK 132
Query: 476 AVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
+ P+T K R D D ++ +AK++E SG LT+H
Sbjct: 133 VSTKPVTVKFRKGFDNDNINALEFAKIMENSGADALTIH 171
>UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1;
Caminibacter mediatlanticus TB-2|Rep:
tRNA-dihydrouridine synthase B - Caminibacter
mediatlanticus TB-2
Length = 311
Score = 94.3 bits (224), Expect = 2e-18
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +2
Query: 86 MANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV 265
M N + P F +AP+ ++L +R + + G ++ ++ M+++N + + K +
Sbjct: 1 MTNISILKSKPLFFLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQ 60
Query: 266 TCEEDRPLIVQFCGNNPEIMASAAKLAEE--YCDAIDINLGCPQSIAKRGRYGSFLQDDW 439
++ P +Q NN E A ++ E + D IDINLGCP + A+R YG L D
Sbjct: 61 KSSKETPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDE 120
Query: 440 --ELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
E LKEIV+A+ K ++ K+R+ + +V+ AKMLE G K LTVH
Sbjct: 121 NKEKLKEIVSAIIKTSKKIVSAKMRLGYNEVVAVDRAKMLEDLGIKFLTVH 171
>UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 339
Score = 93.5 bits (222), Expect = 3e-18
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
E P ++ PMV S+L +R LCR + ++ YTPM+ + F ++ R + T + D+
Sbjct: 22 EKGRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDK 81
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV- 460
+IVQ NN + ++ + D I IN GCP R G+ L D +L+ E++
Sbjct: 82 CVIVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIK 141
Query: 461 TAMSK-AVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
TA K SI I K+RI DI++++++ + +G LTVH
Sbjct: 142 TAKDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVH 184
>UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Shewanella sp. (strain W3-18-1)
Length = 343
Score = 93.1 bits (221), Expect = 4e-18
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Frame = +2
Query: 38 LSYKKIIIRLVNNNYIMANWIFELNNPQFVVAPMVDASELAWRLLCRRHGAN-LCYTPML 214
+S +I + + NN I + L+ F +APM+D ++ +R R A L YT M+
Sbjct: 1 MSQHRIDVNTLKNNNIDT---YSLDRT-FSIAPMLDWTDRHYRYFARLMSAKALLYTEMV 56
Query: 215 HSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQ 391
+ R D L +E+ PL +Q G+NP+ +A AKLA E D +++N+GCP
Sbjct: 57 TTGAILHG---RGDYLAYNQEEHPLALQLGGSNPQDLARCAKLAAERGYDEVNLNVGCPS 113
Query: 392 SIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVN----YAKMLEA 559
+ GR+G+ L + EL+ E V AM + V IP+T K RI D S + ++ A
Sbjct: 114 DRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTYFIDIVNA 173
Query: 560 SGCKLLTVH 586
GC T+H
Sbjct: 174 KGCTDFTIH 182
>UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2;
Desulfitobacterium hafniense|Rep: Putative
uncharacterized protein - Desulfitobacterium hafniense
(strain Y51)
Length = 326
Score = 91.5 bits (217), Expect = 1e-17
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
FEL P F+ APM ++ A+R R G +T M+ T + L E
Sbjct: 11 FELGIPAFL-APMAGVTDKAFRETVRSVGGLHVWTEMISDKALTYMNSRTLEMLDLSGEA 69
Query: 281 RPLIVQFCGNNPEIMASAAKLA-EEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKE 454
P IVQ G+ PE+MA AA LA E + IDIN+GCP I K G GS L D L +
Sbjct: 70 SPRIVQLFGSEPEVMAKAAALAVERDAEIIDINMGCPTPKIVKNGE-GSALLQDLPLAQR 128
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSV--NYAKMLEASGCKLLTVH 586
I A+ KAV +P+T K+R+ ++ V AK +EA G ++++VH
Sbjct: 129 IAEAVVKAVEVPVTVKMRLGWTAERIVAPELAKRVEAVGVQMVSVH 174
>UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=8; Desulfuromonadales|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Geobacter sp. FRC-32
Length = 343
Score = 90.6 bits (215), Expect = 2e-17
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L N ++APM + L R+L R GA L +T M+ N ++ K D L DR
Sbjct: 28 QLEN-NLILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRRDPMDR 86
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT 463
P+ +Q G++P+++A A+L E+Y + IDIN+GCP GS L + + I+
Sbjct: 87 PMGIQIFGDDPQLLAEGARLVEQYGELIDINMGCPVRKVVGSGAGSALLREPAKVGMIIK 146
Query: 464 AMSKAVSIPITCKVRI-FEDIDKS-VNYAKMLEASGCKLLTVH 586
A+ KA S+P+T K+R + D + + ++ EA G +T+H
Sbjct: 147 AVRKATSLPLTIKIRTGWGAADHTFLEIGRIAEAEGVDGVTLH 189
>UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 4,
putative - Trypanosoma brucei
Length = 419
Score = 90.6 bits (215), Expect = 2e-17
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+ APMV S A+R LCR G ++ YT M+ ++ F R+ + LI Q
Sbjct: 62 IQAPMVRCSRPAFRKLCRLWGTDISYTHMIMADSFACSEAARQAEFSIYSGETRLITQLA 121
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV----TAMS 472
++ A+AA + +CDAID+N GCPQ G+ L + E++ + V A+
Sbjct: 122 SSSGPTAATAAAIVAPWCDAIDLNCGCPQRRVMADGLGAALLRNPEVVADTVRCVRNALE 181
Query: 473 KAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
V +P K+R+ +D+ SV++A+ EA+G +TVH
Sbjct: 182 GGVELPCVVKMRVKDDVRLSVDFARQCEAAGAAWITVH 219
>UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=5; Chloroflexi (class)|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Chloroflexus
aurantiacus J-10-fl
Length = 407
Score = 90.2 bits (214), Expect = 3e-17
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWR-LLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P ++APM ++ +R ++ R G L T M ++ + A R L E+RPL
Sbjct: 83 PNIILAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEERPLT 142
Query: 293 VQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
+Q GN+P+++A+AA++ E+ D IDIN GCP G +GS L D ++ ++ A+
Sbjct: 143 MQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERLLRAV 202
Query: 470 SKAVSIPITCKVRIFEDIDKSVNY---AKMLEASGCKLLTVH 586
+AV IP+T K R D ++S+N+ K EA+G L +H
Sbjct: 203 REAVQIPVTLKFRAGWD-EQSLNFIEAGKRAEAAGVSALALH 243
>UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17;
Pasteurellaceae|Rep: tRNA-dihydrouridine synthase B -
Pasteurella multocida
Length = 332
Score = 89.8 bits (213), Expect = 4e-17
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
++L N F+ APM ++ +R +C +GA L ++ M+ +N + K L +E
Sbjct: 6 YQLKNRIFL-APMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEA 64
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
VQ G +P+ MA AA++ EY + IDIN+GCP R GS L +L+K+I
Sbjct: 65 GINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQI 124
Query: 458 VTAMSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
+ + K+V++P+T K+R D D + AK+ E G + LT+H
Sbjct: 125 LNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIH 169
>UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3
family; n=23; Bacteroidetes/Chlorobi group|Rep:
TIM-barrel protein, putative, NifR3 family -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 333
Score = 89.0 bits (211), Expect = 7e-17
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L ++APM D +++A+R++C++ GA+L Y+ L ++ + + E +R
Sbjct: 7 DLGVEPLLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIRQVAGTFRKMAIDESER 66
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P+ VQ G + M AA+L E + ID+N GCP + +A +G GS + + L+ EI
Sbjct: 67 PMAVQIYGRDVASMVEAARLCESAGPNLIDLNFGCPVKRVAGKGA-GSGMLRNIPLMIEI 125
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
+ KAV +P+T K R+ D D V+ A+ L+ G LT+H
Sbjct: 126 TREVVKAVKLPVTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIH 170
>UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultured
bacterium 578|Rep: NifR3/Smm1 family protein -
uncultured bacterium 578
Length = 322
Score = 88.6 bits (210), Expect = 9e-17
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L + + ++APM S+ +R++CR GA L + M+ + K L E P
Sbjct: 7 LLSSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDFRSEQSP 66
Query: 287 LIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT 463
+ +Q G+ + +A +AK A E+ D IDIN+GCP GS L + +L+++I+
Sbjct: 67 ISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDIIK 126
Query: 464 AMSKAVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
A+ AV+IP+T K+R E+ + AK+ E +G K+L +H
Sbjct: 127 AVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIH 169
>UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 367
Score = 88.6 bits (210), Expect = 9e-17
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
P + PMV S+L +R LCR + ++ Y+PM+ + + ++ R +L T ED PLIV
Sbjct: 39 PVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIV 98
Query: 296 QFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
Q NN + ++ YCD I IN GCP R G L + +LL +V A+
Sbjct: 99 QVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAVKD 158
Query: 476 AV--SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ I K+RI E +D++V + L +G +T+H
Sbjct: 159 KYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIH 197
>UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Methylococcus capsulatus
Length = 327
Score = 88.2 bits (209), Expect = 1e-16
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVF---TKDAKYRKDNLVTC 271
+ L++P ++APM ++L +R LCR+ GA L + M+ ++ T+ ++ R+D+
Sbjct: 6 YRLSSP-VILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSRLRQDHR--- 61
Query: 272 EEDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
E P+ VQ G +P MA AA+ + D IDIN+GCP GS L D +L+
Sbjct: 62 GEPGPISVQIVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLV 121
Query: 449 KEIVTAMSKAVSIPITCKVRIFED--IDKSVNYAKMLEASGCKLLTVH 586
I+ A+ +AV +P+T K+R D +V+ K+ E++G + LTVH
Sbjct: 122 ANILEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVH 169
>UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep: Dihydrouridine
synthase - Dichelobacter nodosus (strain VCS1703A)
Length = 318
Score = 87.8 bits (208), Expect = 2e-16
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 4/166 (2%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
F + P ++APM S+L +R LC+R G++ M+ + + L ++
Sbjct: 7 FHYSKPVVLLAPMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPESQLRLQFDDDA 66
Query: 281 R-PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
R P IVQ G +P +MA A++ + CD IDIN+GCP + GS L D +++
Sbjct: 67 RFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEK 126
Query: 455 IVTAMSKAVSIPITCKVRI-FEDIDKSV-NYAKMLEASGCKLLTVH 586
I+ +++ VSIP+T K R+ F + ++ AK+ E +G LTVH
Sbjct: 127 ILAQVTRVVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVH 172
>UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1;
Tetrahymena thermophila SB210|Rep: TIM-barrel protein,
yjbN family - Tetrahymena thermophila SB210
Length = 480
Score = 87.8 bits (208), Expect = 2e-16
Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Frame = +2
Query: 98 IFELNNPQFVVAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCE 274
I +N VAPM+D +++ +R R ++ YT M+H + + ++ L
Sbjct: 96 IANINYHTIAVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFDP 155
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
P+++Q GN+P+ +A AAK+ EE D +++N+GCP + G++G+ L + EL+
Sbjct: 156 VQHPVVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVA 215
Query: 452 EIVTAMSKAVSIPITCKVRIFEDIDKSVNYAK 547
EI+ M +A SIP+T K R+ D S +A+
Sbjct: 216 EIMRKMKEACSIPVTVKCRLGVDNFDSYEFAR 247
>UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 342
Score = 87.8 bits (208), Expect = 2e-16
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
P + APMV S+LA+R ++G +LC+TPM+ + F + R + T P I
Sbjct: 30 PLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTTSPTSTPTIA 89
Query: 296 QFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
QF +P ++ + L Y + IDIN GCPQS A G+ L EL+ E+V
Sbjct: 90 QFGVCSPLEISRSTTLIAPYINGIDINCGCPQSWACACSIGAALMHKRELVAEMVKEAKS 149
Query: 476 AV-------SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
A+ ++ K+RI D+ +V++ K ++ +G +T+H
Sbjct: 150 ALKREGYEGKKTVSVKIRIHRDLRDTVDFIKTVQDAGVDFITIH 193
>UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase;
n=39; Proteobacteria|Rep: Probable tRNA-dihydrouridine
synthase - Rickettsia prowazekii
Length = 327
Score = 87.8 bits (208), Expect = 2e-16
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED-RPLIVQF 301
++APM D ++L +R L +R GA L + M+ S ++ +D VQ
Sbjct: 14 ILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQL 73
Query: 302 CGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G P+++A AAK+ E+ ID+N GCP G GS L D +L +I A KA
Sbjct: 74 AGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVKA 133
Query: 479 VSIPITCKVRI-FEDIDKSV-NYAKMLEASGCKLLTVH 586
V IP+T K+RI ++D ++ AK+ SG +++TVH
Sbjct: 134 VKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVH 171
>UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Thermus
thermophilus|Rep: TRNA-dihydrouridine synthase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 342
Score = 87.4 bits (207), Expect = 2e-16
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPL 289
+P+ VAPMVD ++ +R L R+ + YT M + + R L E+ P+
Sbjct: 3 DPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERL--LAFRPEEHPI 60
Query: 290 IVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G++P+ +A AA++ E + D I++NLGCP A+ G YG+ L D ++EI+ A
Sbjct: 61 ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKA 120
Query: 467 MSKAVSIPITCKVRI-FEDIDKSVNYAKMLEA---SGCKLLTVH 586
M +AV +P+T K+R+ E + A+ +EA +G K+ VH
Sbjct: 121 MGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVH 164
>UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1;
Thiomicrospira crunogena XCL-2|Rep: Dihydrouridine
synthase - Thiomicrospira crunogena (strain XCL-2)
Length = 320
Score = 87.4 bits (207), Expect = 2e-16
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 3/166 (1%)
Frame = +2
Query: 98 IFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEE 277
+F+ + P +APM ++ +R +CR GA+ + M+ S +++ E
Sbjct: 4 LFDSSTPTIALAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTE 63
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
P IVQ G +PE + AA + D ID+N+GCP GS L E + +
Sbjct: 64 TSPRIVQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVAD 123
Query: 455 IVTAMSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
I ++++A+ +P+T K+R D+D +V AK+ + G K +T+H
Sbjct: 124 IFKSLTEAIDLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIH 169
>UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 348
Score = 87.0 bits (206), Expect = 3e-16
Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCR---RHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
VAPM+D + +R L R RH L YT M+ + + R L +E+ P+ +Q
Sbjct: 36 VAPMMDWTTRDYRFLARLITRH--TLLYTEMVVAQAILHGDRDRF--LDFNDEEHPVALQ 91
Query: 299 FCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G++P+ +A A ++A +Y D I++N+GCP ++G+ G+ L + EL+ V AM
Sbjct: 92 LGGSDPQQLAQATRIAGDYGYDEINLNVGCPSDRVQQGKIGAILMAEPELVARCVEAMQA 151
Query: 476 AVSIPITCKVRI----FEDIDKSVNYAKMLEASGCKLLTVH 586
V++P+T K RI +D D + +EASGC LT+H
Sbjct: 152 EVTVPVTVKTRIGIDDQDDYDFLYRFVDRMEASGCTSLTIH 192
>UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 347
Score = 87.0 bits (206), Expect = 3e-16
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Frame = +2
Query: 122 FVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQF 301
F++APM ++ A+R++CRR GANL Y+ M+ + ++ +E++ + VQ
Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQL 78
Query: 302 CGNNPEIMASAAKLAEE----YCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTA 466
G+ PE ASA EE IDIN+ CP + + +G GS L +L ++IV A
Sbjct: 79 FGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGE-GSALMRTPDLAEKIVEA 137
Query: 467 MSKAVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
A +P+T K+R + + + +A+MLE +G + VH
Sbjct: 138 AVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVH 179
>UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1;
Ruminococcus flavefaciens|Rep: Putative dihydrouridine
synthase - Ruminococcus flavefaciens
Length = 332
Score = 86.6 bits (205), Expect = 4e-16
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+APM ++ A+RL+C+R+GA + M+ + + + EE+RP+ VQ G
Sbjct: 18 LAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTVTEEERPMAVQLFG 77
Query: 308 NNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV- 481
+ P+ MA A K+ +Y D IDIN+GCP GS L D L I A KA
Sbjct: 78 SEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAAITEAAVKAAG 137
Query: 482 SIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
P+T K+R D + A+ LEASG + VH
Sbjct: 138 DTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVH 174
>UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1;
Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)|Rep: TIM-barrel protein, yjbN family - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 322
Score = 86.2 bits (204), Expect = 5e-16
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+F VAPM+D ++ R R N+ +T M+ + K R + CE PL++
Sbjct: 6 KFSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVCEH--PLVL 63
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q G+ P+ MA AAK+A+++ + I+IN+GCP + + +G L +++ + V AM
Sbjct: 64 QLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVDAMR 123
Query: 473 KAVSIPITCKVRI----FEDIDKSVNYAKMLEASGCKLLTVH 586
+ V +PIT K RI + D+ VN+ +E+SGC L +H
Sbjct: 124 QMVDVPITVKSRIGVDNMDSYDELVNFVATVESSGCDNLVIH 165
>UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7;
Bacteria|Rep: TIM-barrel protein, yjbN family - Coxiella
burnetii
Length = 353
Score = 85.8 bits (203), Expect = 7e-16
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPL 289
N + +APM+ ++ +R+ R+ + L YT M+ + K ++R L E+ PL
Sbjct: 28 NRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRC--LDYSPEEHPL 85
Query: 290 IVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G++P+ +A A+LAEE D I++N+GCP GR+G+ L + EL+ + V A
Sbjct: 86 ALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAA 145
Query: 467 MSKAVSIPITCKVRIFEDIDKS----VNYAKMLEASGCKLLTVH 586
MS V+IP++ K R D S ++ K + +GC++ +H
Sbjct: 146 MSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIH 189
>UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21;
Cyanobacteria|Rep: TRNA-dihydrouridine synthase A -
Synechococcus sp. (strain RCC307)
Length = 335
Score = 85.0 bits (201), Expect = 1e-15
Identities = 52/163 (31%), Positives = 94/163 (57%), Gaps = 7/163 (4%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEE-DRPLI 292
+F VAPM+D ++ +R++ R+ + L YT M+ + R+D L+ + ++P+
Sbjct: 15 RFSVAPMMDYTDRHFRVVMRQVSRHALLYTEMVVAQALHHG---RQDTLLGFDPLEKPIA 71
Query: 293 VQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
+Q G++P ++A AA+LAE + D I++N+GCP K+GR+G+ L + + + V AM
Sbjct: 72 LQLGGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVARCVEAM 131
Query: 470 SKAVSIPITCKVRIFED----IDKSVNYAKMLEASGCKLLTVH 586
A +P+T K RI D D+ +++ + A+GC+ VH
Sbjct: 132 GAACRLPVTVKHRIGIDERDSYDELLDFVDTVAAAGCQRFAVH 174
>UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214;
Proteobacteria|Rep: tRNA-dihydrouridine synthase B -
Yersinia pestis
Length = 321
Score = 84.6 bits (200), Expect = 2e-15
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
F+L N + APM ++ +R LC GA + + ML SN + +V +E
Sbjct: 6 FQLTNC-LIAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVWRTDKSRLRMVHVDEP 64
Query: 281 RPLIVQFCGNNPEIMASAAKL-AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
VQ GN+P+ MA+AA++ IDIN+GCP R GS L +L+K+I
Sbjct: 65 GIRNVQIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQI 124
Query: 458 VTAMSKAVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
++A+ AV +P+T K+R + + A++ E G + LT+H
Sbjct: 125 LSAVVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIH 169
>UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter
ruber DSM 13855|Rep: NifR3 family enzyme - Salinibacter
ruber (strain DSM 13855)
Length = 443
Score = 83.8 bits (198), Expect = 3e-15
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Frame = +2
Query: 110 NNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPL 289
+ P F+ APM D S+ +R+LC+R+GA++ YT + S ++ ++ L +E+RP+
Sbjct: 74 DRPLFL-APMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLEIFDEERPI 132
Query: 290 IVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G + + +A + + D IDIN GCP + G+ + + + ++ I A
Sbjct: 133 GIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNITAA 192
Query: 467 MSKAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
+ + + P+T K R+ D D V+ A+MLE G LTVH
Sbjct: 193 VMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVH 234
>UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 family;
n=1; Pedobacter sp. BAL39|Rep: Probable TIM-barrel
protein, NifR3 family - Pedobacter sp. BAL39
Length = 335
Score = 83.8 bits (198), Expect = 3e-15
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L ++APM D S+ +R +C++ G ++ YT + S +DA + L E +R
Sbjct: 9 DLGEFPLLLAPMEDVSDPPFRFVCKQSGVDMMYTEFISSEGLIRDAAKSRAKLDIFEYER 68
Query: 284 PLIVQFCGNNPEIMASAAKLAE-EYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P+ +Q G+ + M A ++A D +DIN GCP + +A RG GS L D + + E+
Sbjct: 69 PIGIQIFGSEIDHMREATEIASMAGPDLMDINYGCPVKQVACRGA-GSALLQDIDKMVEM 127
Query: 458 VTAMSKAVSIPITCKVRI-FEDIDKSV-NYAKMLEASGCKLLTVH 586
A+ A +P+T K R+ ++D K+V A+ L+ G + LT+H
Sbjct: 128 TKAVVNATHLPVTVKTRLGWDDNTKNVEEVAERLQDIGIQGLTIH 172
>UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA-dihydrouridine synthase B -
Stigmatella aurantiaca DW4/3-1
Length = 369
Score = 83.4 bits (197), Expect = 4e-15
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSN-VFTKDAKYRKDNLVTCEE 277
+ L NP +++APM SE +R++ + GA LC T ++ + + + + K + E
Sbjct: 39 YSLPNP-YILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQRTLKYLRFSPEV 97
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
+RP +Q G PE MA AA + + + IDIN+GCP + GS L +
Sbjct: 98 ERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAAR 157
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSVNYAKM---LEASGCKLLTVH 586
IV A+++A +P+TCK+R D NY +M L ++GC L +H
Sbjct: 158 IVQAIAEATGLPVTCKIRSGWDAHHR-NYLQMAGELFSAGCAALAIH 203
>UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 493
Score = 83.4 bits (197), Expect = 4e-15
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+ APMV S A+R +CR G + YT ML + F K R E + L+ Q
Sbjct: 99 IQAPMVRCSRPAFRQVCRAWGTRVSYTHMLMAESFVKSPHARHAEFARYEGENRLVAQLA 158
Query: 305 GNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
+ A AA L YCD ID+N GCPQ A + G+ L D E + ++V ++ A+
Sbjct: 159 AKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMVRSIRNAMP 218
Query: 485 -------------------------IPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+P K+RI +D+ +SV++A+ EA+G LTVH
Sbjct: 219 DGSTAPMIVGNGGEYSSCTSAVPPFLPCVVKMRIKDDLRRSVDFARQCEAAGVSWLTVH 277
>UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR -
Leptospira interrogans
Length = 329
Score = 83.0 bits (196), Expect = 5e-15
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
++PM S+ R +CR+ GA YT ++++ A E+RP+ Q G
Sbjct: 15 LSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRYKLEERPITFQIFG 74
Query: 308 NNPEIMASAAKLAEEY-CDAIDINLGC-PQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
N EI+A AA++ +E D ID+N+GC + ++ RG L+ L +I+ A+ K V
Sbjct: 75 NRLEIIAEAAEIIQELKPDIIDLNMGCSTRKVSLRGAGAGLLRRPL-LAGKIIEAIKKRV 133
Query: 482 SIPITCKVRIFEDIDKSVNY---AKMLEASGCKLLTVH 586
+IP+T K+RI D S NY +K+LE SG LTVH
Sbjct: 134 NIPVTAKIRIGWD-STSRNYLEVSKILEESGVDALTVH 170
>UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3;
Mollicutes|Rep: TRNA dihydrouridine synthetase -
Mesoplasma florum (Acholeplasma florum)
Length = 325
Score = 81.8 bits (193), Expect = 1e-14
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ V PM S +RL+ + GA+L M+ T + K L +++ P+ +Q
Sbjct: 11 KLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAVEKKEHPMSMQ 70
Query: 299 FCGNNPEIMASAAKLAEEY--CDAIDINLGCPQ-SIAKRGRYGSFLQDDWELLKEIVTAM 469
GN+ E A K +E CD ID+N+GCP +A R GS L EL+ +IV A+
Sbjct: 71 IFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELIYDIVKAV 130
Query: 470 SKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
+ S P+T K+R+ D + +V +K++E +G +TVH
Sbjct: 131 VENTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGITVH 171
>UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1;
Desulfotalea psychrophila|Rep: TRNA-dihydrouridine
synthase - Desulfotalea psychrophila
Length = 328
Score = 81.8 bits (193), Expect = 1e-14
Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Frame = +2
Query: 122 FVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQF 301
FV+AP+ ++L++RLLC + GA+ + M+ + + + + L + E+RP+ Q
Sbjct: 13 FVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLASLPEERPVSFQL 72
Query: 302 CGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G P+IMA A + ++ D IDIN+GCP + + K+G G+ L EL +++ ++
Sbjct: 73 FGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGA-GAALMSTPELAYDVIRSVVD 131
Query: 476 AVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
IP+T K R + V + M E +G + VH
Sbjct: 132 NTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVH 170
>UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2;
Sinorhizobium|Rep: Dihydrouridine synthase DuS -
Sinorhizobium medicae WSM419
Length = 385
Score = 81.8 bits (193), Expect = 1e-14
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Frame = +2
Query: 110 NNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED--- 280
N P F VAPM+D ++ +R R L +L++ + DA R D D
Sbjct: 18 NGPVFAVAPMIDWTDRHYRFFARV----LSRHALLYTEMIVADAVLRGDRAKLLGHDASE 73
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
P+ +Q GN+P MA AA++ E Y D I++N+GCP + G +G+ L + L+ +
Sbjct: 74 HPVALQLGGNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADC 133
Query: 458 VTAMSKAVSIPITCKVRI-FEDIDKSV 535
+ AM AV IP+T K RI +D D V
Sbjct: 134 IAAMKAAVEIPVTVKCRIGVDDQDPEV 160
>UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Putative TIM-barrel protein, nifR3 family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 328
Score = 81.4 bits (192), Expect = 1e-14
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+APM ++ +R LC R GA++ T M+ + T ++ K+ + E+++ VQ G
Sbjct: 10 LAPMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQKTKELISFSEDEKIKGVQIFG 69
Query: 308 NNPEIMASAAKLAE---EYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
++P +MA A K+ + EY D IDIN+GCP + GS L + L +IV ++K
Sbjct: 70 SDPHVMAEAVKIIQDEFEY-DFIDINMGCPVPKVVKSGEGSALMKNPSLAAKIVEEVAKV 128
Query: 479 VSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
P++ K+R E+ + +A +++ SG +TVH
Sbjct: 129 SRKPVSVKIRKGFDEENINAPEFACIMQESGASFITVH 166
>UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 354
Score = 81.0 bits (191), Expect = 2e-14
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWR-LLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P +APMV S A R L+ G L YT ML + + L T +RPLI
Sbjct: 42 PPLSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLI 101
Query: 293 VQ-FCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
Q F + + + K+ D +DINLGCP +RG G+ L +DW+ +++IV++
Sbjct: 102 YQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSA 161
Query: 470 SKAVSIPITCKVRIFEDIDKS---VNYAKMLEASGCKLLTVH 586
+ + ++ K+R+ + K +++ KMLEA G LL VH
Sbjct: 162 RRHTDLTLSAKIRV-GHVGKEAHLLDFCKMLEAEGVDLLAVH 202
>UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2;
Proteobacteria|Rep: NifR3/Smm1 family protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 338
Score = 81.0 bits (191), Expect = 2e-14
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
N Q ++APM ++ +R LC + GA L + ML SN + + K ++ +
Sbjct: 9 NSQVMLAPMAGITDQPFRQLCCQLGAGLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRS 68
Query: 293 VQFCGNNPEIMASAAKL-AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
VQ G+ P+ +A AAK+ A+ IDIN+GCP + GS L + ++ IV ++
Sbjct: 69 VQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSV 128
Query: 470 SKAVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
AV IP+T K+R ED + AK+ E SG L VH
Sbjct: 129 VNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVH 169
>UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Strongly similar to tRNA-dihydrouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 341
Score = 80.6 bits (190), Expect = 2e-14
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ ++APM S++ +RL+CRR G ++ YT ++ + + K L EE+RP+ Q
Sbjct: 34 ELILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQ 93
Query: 299 FCGNNP-EIMASAAKLAEEYCDAIDINLGCPQS-IAKRGRYGSFLQDDWELLKEIVTAMS 472
GN+ +I + K+ + D IDIN+GC S IA +G L+ ++ K + ++
Sbjct: 94 VVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISK-MFNNLT 152
Query: 473 KAVSIPITCKVRIFEDIDKSVNY---AKMLEASGCKLLTVH 586
++S+P+T K+R+ D K+ NY A++LE +G L+ VH
Sbjct: 153 GSLSVPVTGKIRLGWD-HKTRNYIEVARILEENGASLIAVH 192
>UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative;
n=3; Leishmania|Rep: Dihydrouridine synthase (Dus),
putative - Leishmania major
Length = 661
Score = 80.6 bits (190), Expect = 2e-14
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +2
Query: 356 CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFE 517
CDA+D+NLGCPQ IA+RG YGSFL +DWEL+ IV + + +P+T K+R+F+
Sbjct: 281 CDAVDVNLGCPQGIARRGHYGSFLMEDWELIHTIVHTLHVELEVPVTVKIRVFD 334
Score = 62.1 bits (144), Expect = 9e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +2
Query: 122 FVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTC 271
F+V PMVD SEL +R+LCR++GA + YTPMLH+ F A YR L C
Sbjct: 115 FLVGPMVDQSELPFRMLCRQYGATVAYTPMLHAKSFADGAVYRSHFLSVC 164
Score = 32.7 bits (71), Expect = 6.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 278 DRPLIVQFCGNNPEIMASAAKLA 346
DRP IVQFCGN+ + + AA+ A
Sbjct: 212 DRPCIVQFCGNDADTVLRAARFA 234
>UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 362
Score = 80.2 bits (189), Expect = 3e-14
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Frame = +2
Query: 101 FELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT--CE 274
F +++P ++APM ++ +R L +G L +T M+ S ++ D + E
Sbjct: 7 FPVSDPLIMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAE 66
Query: 275 EDR--PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWEL 445
R P VQ G +P IMA AA+ E + IDIN+GCP G GS L D L
Sbjct: 67 AGRAGPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPL 126
Query: 446 LKEIVTAMSKAVSIPITCKVRI-FEDIDK-SVNYAKMLEASGCKLLTVH 586
I+ A+ AV++P++ K+R+ ++D + +V A++ E++G LTVH
Sbjct: 127 AARILEAVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVH 175
>UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4;
Leptospira|Rep: TRNA-dihydrouridine synthase -
Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197)
Length = 339
Score = 79.8 bits (188), Expect = 4e-14
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+APM+D ++ +R R + YT M+H+ + R L E+ PL +Q
Sbjct: 16 LAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILHGDRRRF--LSYSPEELPLAIQLG 73
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G+NP+ +A ++K+ E+Y I++N+GCP + G +G+ L + E + E+V AM V
Sbjct: 74 GDNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLMETPERVAELVCAMDGNV 133
Query: 482 SIPITCKVRI----FEDIDKSVNYAKMLEASGCKLLTVH 586
SIP+T K RI E ++ + + + +G + VH
Sbjct: 134 SIPVTVKCRIGISGKETLEDLCRFIECVRQAGVRRFIVH 172
>UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 436
Score = 79.8 bits (188), Expect = 4e-14
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTP------MLHSNVFTKDA----KYRK-DNLV-- 265
++APMV A RLLC ++GA+LCYT ++ + +A YR D+++
Sbjct: 10 ILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGDDIILR 69
Query: 266 -TCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWE 442
EE I+Q N+ E A A++ + ID+N+GCP+ + G+ L E
Sbjct: 70 LAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAALLTQTE 129
Query: 443 LLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ +I+T++ A +P+TCK+R+ +D + ++ + +E L VH
Sbjct: 130 KIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVH 177
>UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231;
Bacteria|Rep: tRNA-dihydrouridine synthase A - Shigella
flexneri
Length = 330
Score = 79.8 bits (188), Expect = 4e-14
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+F VAPM+D ++ R R N L YT M+ + + D L EE+ P+ +
Sbjct: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVAL 68
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q G++P +A AKLAE D I++N+GCP + G +G+ L + +L+ + V AM
Sbjct: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128
Query: 473 KAVSIPITCKVRIFEDIDKSVNY 541
VSIP+T K RI D S +
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEF 151
>UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Syntrophobacter fumaroxidans MPOB|Rep: Putative
TIM-barrel protein, nifR3 family - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 352
Score = 78.6 bits (185), Expect = 1e-13
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 7/161 (4%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP----LI 292
V+APM ++ A+R L GA + T M+ ++ + D C + P L
Sbjct: 25 VLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRATLD---LCRQQHPVGVPLA 81
Query: 293 VQFCGNNPEIMASAAKLAEEYCDA-IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
VQ G +P +MA AA+L E+ A IDIN GCP R G+ L D + L +V A+
Sbjct: 82 VQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAV 141
Query: 470 SKAVSIPITCKVRIFED--IDKSVNYAKMLEASGCKLLTVH 586
+AVS+P+T K+R+ D + A+ L ++G +TVH
Sbjct: 142 KRAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVH 182
>UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 333
Score = 78.6 bits (185), Expect = 1e-13
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Frame = +2
Query: 134 PMVDASELAWRLLCRRHGANLCYTP------MLHSNVFTKDAKYR------KDNLVTCEE 277
PMV AS L +RL+C +GA+ Y P +L S+ + Y K+ V
Sbjct: 17 PMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPKNPHVHFHT 76
Query: 278 DRP----LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWEL 445
D LI Q N+ AA + ++ DAID+N GCP+S A GS L + E+
Sbjct: 77 DPKEKGKLIFQILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGSSLMSEPEI 136
Query: 446 LKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ ++V+A+ + ++PI+ K RI +I++S+ +A E +G + VH
Sbjct: 137 VADVVSALRRNYNVPISVKHRIHHNIEESIQFAVACENAGASAIAVH 183
>UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protein
NifR3; n=3; Acetobacteraceae|Rep: Nitrogen assimilation
regulatory protein NifR3 - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 371
Score = 77.8 bits (183), Expect = 2e-13
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++AP+ ++L +R L R GA L + M+ S ++ + + E P VQ
Sbjct: 38 ILAPLSGVTDLPFRQLARDLGAGLVVSEMIASWAMIRENENTM-RMARMAERGPNAVQLA 96
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G +P+ MA AAK++ + + IDIN GCP + +A GS L D L +++ A ++A
Sbjct: 97 GCDPKAMAQAAKISVDGGANLIDINFGCPVKKVAIGQMAGSALMRDEVLAGKLLEATARA 156
Query: 479 VSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
V++P+T K+R+ D + + AK+ E SG +L+TVH
Sbjct: 157 VNVPVTLKMRMGWDHNSLNAPRLAKIAEESGIRLVTVH 194
>UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,
putative; n=7; Plasmodium|Rep: Uncharacterized protein
family UPF0034, putative - Plasmodium yoelii yoelii
Length = 531
Score = 77.8 bits (183), Expect = 2e-13
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P VAPM++ + +R L R + +T M+ N + +++L + + P++
Sbjct: 152 PLIQVAPMINVTNRHFRALVRIISKKVQLWTEMIVDNTLLYNINNLEEHLGFNKNEHPIV 211
Query: 293 VQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQS-IAKRGRYGSFLQDDWELLKEIVTA 466
Q G++P ++ AA L E+ D I+IN+GCP + +A +G +G++L + +L+K IV
Sbjct: 212 CQLGGSDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVKNIVYE 271
Query: 467 MSKAVSIPITCKVRI-FEDIDKSV---NYAKMLEASGCKLLTVH 586
+ K V IP+T K+R +++D ++ + + ++GC +H
Sbjct: 272 IKKKVQIPVTVKIRTGVDNLDSFSFLRSFIETVSSAGCDHFIIH 315
>UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Moorella thermoacetica ATCC 39073|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Moorella thermoacetica (strain ATCC 39073)
Length = 334
Score = 77.4 bits (182), Expect = 2e-13
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++APM ++ +RLL R GA L YT M+ + + K L E P+ VQ
Sbjct: 17 IMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDLKGEPGPVAVQLF 76
Query: 305 GNNPEIMASAAKLAEEYCDA-IDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G PEIMA+A ++A A ID+N+GCP I K G GS L D IV AM +A
Sbjct: 77 GREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGE-GSALMRDLPRAAAIVAAMVRA 135
Query: 479 VS-IPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
+P+T K+R+ ED V A+ + +G + +H
Sbjct: 136 AGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIH 174
>UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9;
Magnoliophyta|Rep: OSIGBa0125M19.5 protein - Oryza
sativa (Rice)
Length = 319
Score = 77.4 bits (182), Expect = 2e-13
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT---------- 268
+ V+APMV L +RLL +GA++ Y + + F K + ++L T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDT 65
Query: 269 -----CEEDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQ 430
C ++R +V G + + A AA+L AIDIN+GCP+S + G G+ L
Sbjct: 66 VVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALL 125
Query: 431 DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
EL+ +I+T + + + +TCK+R+ +V A+ +E G L VH
Sbjct: 126 SKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVH 177
>UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase B
- Serratia marcescens
Length = 334
Score = 77.4 bits (182), Expect = 2e-13
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+ APM ++ +R LC GA + + ML SN + +V +E VQ
Sbjct: 13 IAAPMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVWRTDKSRLRMVHSDEPGIRSVQIA 72
Query: 305 GNNPEIMASAAKL-AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G +P+ MA+AA++ IDIN+GCP R GS L +L+K I+ A+ AV
Sbjct: 73 GCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGSALLQYPDLVKRILHAVVDAV 132
Query: 482 SIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
+P+T K+R + V A++ E G + LT+H
Sbjct: 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIH 169
>UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=27;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 2-like -
Homo sapiens (Human)
Length = 493
Score = 77.4 bits (182), Expect = 2e-13
Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPML------------HSNVFTKDAKYRKDNL 262
+ ++APMV L RLL +GA++ Y L + + T D D +
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 263 V--TCEEDRPLIV-QFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQD 433
V TCE ++ +V Q ++ E + A+L E ID+N+GCP+ + +G G+ L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 434 DWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
D + +++I++ + K P+TCK+RI ++ +++ K +E +G + VH
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVH 183
>UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 330
Score = 77.0 bits (181), Expect = 3e-13
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE---EDR 283
N + VAPM+D ++ R R N +L+S + +A +R D E ++
Sbjct: 2 NRKVSVAPMMDCTDRHERFFLRLISKNT----LLYSEMVVSEAIHRGDKKKLLEFNINEK 57
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ +Q G++P ++A A K+ E++ D I++NLGCP ++ ++G+ L + L+ + +
Sbjct: 58 PIALQIGGSSPTLLAEATKVGEDFGYDEINLNLGCPSKKVEKNKFGACLMKEPNLVADCL 117
Query: 461 TAMSKAVSIPITCKVRI----FEDIDKSVNYAKMLEASGCKLLTVH 586
+ M +P+T K RI ED + + L+++G K +H
Sbjct: 118 SKMQSVTKLPVTIKTRIGYDDTEDYENLHRFISTLKSTGVKTFIIH 163
>UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: NifR3
protein - Deinococcus radiodurans
Length = 406
Score = 75.8 bits (178), Expect = 7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT-CEEDR 283
L+ P V+APM S+ R L GA + M+ + ++ +L ++
Sbjct: 89 LSRPGAVLAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGSEQESLSLGRPYPGEQ 148
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCD--AIDINLGCPQSIAKRGRYGSFLQDDWELLKEI 457
VQ G +P+++A A AE + AID+NLGCP RG+ G+ L E+ E+
Sbjct: 149 GRAVQLFGADPDVLADAVGKAEAWFAPAAIDLNLGCPVPKV-RGKGGACLLQTPEVAYEL 207
Query: 458 VTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
V AM +A + ++ K+R+ D ++SV A+ LEA+G ++TVH
Sbjct: 208 VRAMRQATGLDVSAKIRLGWDENRSVEIAQGLEAAGAAVVTVH 250
>UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protein;
n=1; Trichomonas vaginalis G3|Rep: TIM-barrel protein,
nifR3 family protein - Trichomonas vaginalis G3
Length = 301
Score = 75.8 bits (178), Expect = 7e-13
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNP 316
M +++A+R + GA++ T M+ + + K D L +++ + VQ G++P
Sbjct: 1 MAGYTDIAFREVATEKGADITVTEMVSAMALVYENKKTIDLLDISPKEKKVAVQIFGSDP 60
Query: 317 EIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPI 493
++M AA++ +Y +DIN+GCP + GS L + L+ +IV ++ K + P+
Sbjct: 61 DVMGEAARILNDYDFSYVDINMGCPAPKIVKNNSGSHLLSNPSLVYDIVKSVVKNSNKPV 120
Query: 494 TCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
T KVR S+ K +EA+G +TVH
Sbjct: 121 TAKVRKGIGGVSSMKAIKNIEAAGASFVTVH 151
>UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase;
n=1; Aquifex aeolicus|Rep: Probable tRNA-dihydrouridine
synthase - Aquifex aeolicus
Length = 316
Score = 75.8 bits (178), Expect = 7e-13
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ ++APM + A+R LCRR GA+ YT ++ + ++ K T EE+RP+ +Q
Sbjct: 7 EVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFT-EEERPIHIQ 65
Query: 299 FCGNNPEIMASAA-KLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDD---WELLKEIV 460
G+NPE +A A+ +A+E D IDIN GC + + G LQ E++KE V
Sbjct: 66 VFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKETV 125
Query: 461 TAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
A+ K IP++ K+R+ + D+ + L+ +G L+ +H
Sbjct: 126 EAL-KPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIH 166
>UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22;
Alphaproteobacteria|Rep: Nitrogen regulation protein -
Bradyrhizobium japonicum
Length = 371
Score = 75.4 bits (177), Expect = 9e-13
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
E+ P F+ APM ++ R L GA L + M S+ + + + CE
Sbjct: 45 EVATPVFL-APMSGVTDSPVRRLVAELGAGLVVSEMTASDELANGHRMSR---LRCEATG 100
Query: 284 --PLIVQFCGNNPEIMASAAKLAE-EYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
P +VQ G MA A++AE E D IDIN+GCP G+ GS L D +
Sbjct: 101 IGPHVVQLAGCEAHWMAEGARIAEAEGADIIDINMGCPARHVTGGQSGSALMRDLDHAVG 160
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSVN---YAKMLEASGCKLLTVH 586
++ A AV +P+T K+R+ D D+S N A+ EA+G KL+TVH
Sbjct: 161 LIDATIAAVKVPVTLKMRLGWD-DRSRNAPELARRAEAAGIKLVTVH 206
>UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n=1;
Bdellovibrio bacteriovorus|Rep: Transcription regulator
homolog yacF - Bdellovibrio bacteriovorus
Length = 337
Score = 75.4 bits (177), Expect = 9e-13
Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
NP FV+APM ++ A+R ++ A++ T ++ ++ + + E RP+
Sbjct: 10 NP-FVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRTLKLMSFDESQRPIG 68
Query: 293 VQFCGNNPEIMASAAKLAE-EYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G PEI+A AA++AE + CD +D+N GCP + K+G GS + D ++++V+
Sbjct: 69 IQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGA-GSAILKDPAAVQKMVST 127
Query: 467 MSKAVSIPITCKVR 508
+ A+ IP+T K+R
Sbjct: 128 VKAAIKIPLTIKIR 141
>UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;
Aurantimonadaceae|Rep: Nitrogen regulation protein nifr3
- Fulvimarina pelagi HTCC2506
Length = 344
Score = 75.4 bits (177), Expect = 9e-13
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
EL N F AP+ S++ +R L RR GA L + M+ S F K A+ K + D
Sbjct: 15 ELANRVFA-APLSGISDVPFRRLSRRFGAGLVVSEMVASGEFVKGAEEGK---LRALRDG 70
Query: 284 PLI--VQFCGNNPEIMASAAK-LAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
P + VQ G +P M AA+ LA+E D IDIN+GCP G GS L + +L
Sbjct: 71 PGVHTVQLAGRDPIWMEEAARRLADEGADLIDINMGCPAKKVVGGLSGSALMREPDLAFS 130
Query: 455 IVTAMSK-AVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
IV A + A + P++ K+R+ D + A EA+G ++TVH
Sbjct: 131 IVEATVRGAGATPVSLKMRLGWCRDSMNAAEIAVRAEAAGVTMITVH 177
>UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_87,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 346
Score = 75.4 bits (177), Expect = 9e-13
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVT--CEEDRPLIVQ 298
+APM+D + +R+ R N + YT M+H N + LV + + P++ Q
Sbjct: 11 IAPMIDITYEHFRVFFRLLTKNCVLYTEMIHENAINLSRVLKPFPLVLDYSQVEHPVVCQ 70
Query: 299 FCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
GN+PE +A AA++AE+ D I++N+GCP + G +G+ L + L+ + + M +
Sbjct: 71 LGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMKKMKE 130
Query: 476 AVSIPITCKVRIFED 520
AV IP T K R+ D
Sbjct: 131 AVKIPCTLKCRLGVD 145
>UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5;
Firmicutes|Rep: TRNA-dihydrouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 324
Score = 74.9 bits (176), Expect = 1e-12
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP 286
L NP + APM ++ A+R+L R G L T M+ L E P
Sbjct: 8 LGNP-VIAAPMAGITDKAFRILAREFGCGLVCTEMVSDQALLHGNPKTCSLLDVAGEAGP 66
Query: 287 LIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIV 460
+ VQ G+N MA AA +AE IDIN+GCP I K G G+ L + E IV
Sbjct: 67 VSVQIFGSNAACMAEAAGIAESRGAGIIDINMGCPTPKIVKNGE-GAALMREPEKAARIV 125
Query: 461 TAMSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
A+ + V +P+T K+R D + +V A++ +G +TVH
Sbjct: 126 RAVVERVKVPVTVKMRKGWDDNSPNAVELARLAAEAGAAAVTVH 169
>UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 313
Score = 74.9 bits (176), Expect = 1e-12
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV----------- 265
+ + APMV S L++RL C +GA+L ++P L + DN +
Sbjct: 12 KLIAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDDNNISLIKVENGHNR 71
Query: 266 -----TCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQ 430
T EE LI+Q + AA + E+ IDIN GCP+S A GS +Q
Sbjct: 72 RIFHTTAEERGKLIIQLITVDGPNAIKAADMCTEFASGIDINCGCPESFACHRGGGSKMQ 131
Query: 431 DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
E ++V + +PI+ K+R+ + +++S+ +AK + +G +TVH
Sbjct: 132 --LESAVDVVKTLKMNSPLPISVKMRVKDTVEESLQFAKAMVDAGAVAITVH 181
>UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep:
Putative TIM-barrel protein, nifR3 family - Candidatus
Nitrosopumilus maritimus SCM1
Length = 320
Score = 74.9 bits (176), Expect = 1e-12
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEE-------DRP 286
+APM S+ A RL C++ GA L T + + K+N+ T +E +RP
Sbjct: 11 LAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIEFSEQERP 70
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
+ VQ G++ + AA + E Y D ID N+GCP + G L + L ++I
Sbjct: 71 ISVQLFGSDLYALEKAATIVEPYFDIIDYNMGCPAPHITQQMAGGALLQEVNLTQQIFET 130
Query: 467 MSKAVSIPITCKVRI-FEDIDKSV--NYAKMLEASGCKLLTVH 586
+ AV P+T K+R D K + + A++ E G +++T H
Sbjct: 131 LVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFH 173
>UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase;
n=21; Alphaproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Rhodobacter capsulatus
(Rhodopseudomonas capsulata)
Length = 324
Score = 74.9 bits (176), Expect = 1e-12
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSN-VFTKDAKYRKDNLVTCEEDRPL 289
+P ++APM ++L +R + R GA L + M+ S + T R P
Sbjct: 11 DPPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPT 70
Query: 290 IVQFCGNNPEIMASAAKL-AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
VQ G MA AAK+ A+ + IDIN+GCP G G+ L + + ++ A
Sbjct: 71 SVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEA 130
Query: 467 MSKAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
+ AV +P+T K+R+ D D+ + A EA+G K++ +H
Sbjct: 131 VVGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIH 172
>UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;
Caulobacter|Rep: Nitrogen regulation protein Nifr3 -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 315
Score = 74.1 bits (174), Expect = 2e-12
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 7/157 (4%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNL--VTCEEDRPL-IVQFCG 307
M S+L +R GA T M+ S F AK R D + E PL ++Q G
Sbjct: 1 MTGVSDLPFRETASALGAPYVATEMVASAEF---AKGRPDVVRRAAVGEGLPLTVIQLVG 57
Query: 308 NNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
+ + MA A++A+E + ID+N GCP + +A GS L + +L + +V A +AV
Sbjct: 58 RDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAEALVAAAVEAV 117
Query: 482 SIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
+P+T K+R+ DID + + A+ EA+G K +TVH
Sbjct: 118 DVPVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVH 154
>UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4;
Legionella pneumophila|Rep: Nitrogen regulation protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 329
Score = 74.1 bits (174), Expect = 2e-12
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +2
Query: 287 LIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT 463
L Q GN P ++A +AAKL D IDIN GCP+S ++ GS L +D + L I++
Sbjct: 77 LAYQISGNEPHVLAEAAAKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIAIIS 136
Query: 464 AMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ A+SIP+T K+RI ++ +K + AK +E +G L VH
Sbjct: 137 RVRAAISIPLTIKIRI-QNNEKDLTLAKQIEDAGAHALIVH 176
>UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Plesiocystis pacifica SIR-1
Length = 362
Score = 73.7 bits (173), Expect = 3e-12
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCR---RHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
VAPM+D ++ +R L R RH L YT M+ R+ L + PL +Q
Sbjct: 25 VAPMMDRTDRHFRRLMRLITRH--TLLYTEMVTCPAVLHGD--REHILGYHPSEHPLALQ 80
Query: 299 FCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G++PE +A+ A++A E D ++IN+GCP + G +G L D +++ V AM +
Sbjct: 81 LGGDDPEALAACARIAAELGYDEVNINVGCPSDRVQSGNFGVCLMKDPARVRDCVVAMRE 140
Query: 476 AVSIPITCKVRI-FEDIDK---SVNYAKMLEASGCKLLTVH 586
AV +P+T K RI +++D+ +++ ++ A+ L TVH
Sbjct: 141 AVELPVTVKHRIGVDELDRYEDMLHFVDVVAAAEPDLFTVH 181
>UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1;
Petrotoga mobilis SJ95|Rep: Dihydrouridine synthase, DuS
- Petrotoga mobilis SJ95
Length = 301
Score = 73.7 bits (173), Expect = 3e-12
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
Q +APM D ++ +R +CRR GA +T M+ + ++ + + L ED + VQ
Sbjct: 5 QIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGEDN-IGVQ 63
Query: 299 FCGNNPEIMASAAKLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
GN AAK + IDIN CP + K+G G+ L + +LL +IV + K
Sbjct: 64 LFGNETTKFIEAAKSIQHLASWIDINAACPVNKVVKKGS-GAALLKNPKLLGDIVFNLKK 122
Query: 476 AVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
++ +P+ KVR+ D A+ +E +G + VH
Sbjct: 123 SIDLPVGVKVRLGYDQINIEEVAETVEKAGADYIIVH 159
>UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 392
Score = 73.7 bits (173), Expect = 3e-12
Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWR-LLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCEE 277
+L+ P F +APM D +++++R LL G N+ + + ++ ++ + D L +
Sbjct: 7 KLSKPIFSLAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDKLGYSTQ 66
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP--QSIAKRGRYGSFLQDDWELL 448
++P++ QF GN PE +AK+A E D +DIN+GCP + ++ + G+ L + L
Sbjct: 67 EKPIVAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALITNPSLA 126
Query: 449 KEIVTAMSKAVSI--PITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
KEIV +A++ P++ K RI D + + ++ S LT+H
Sbjct: 127 KEIVKITKEALNFEKPVSVKTRIGFDKIEIDEWIPLILESEPACLTLH 174
>UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=20; Cyanobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Synechococcus sp. (strain
CC9902)
Length = 356
Score = 73.3 bits (172), Expect = 4e-12
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Frame = +2
Query: 131 APMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+P+ ++ +R L RR + L +T M+++ Y K + + EE P+ VQ
Sbjct: 42 SPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEEG-PIAVQLFD 100
Query: 308 NNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
+ P MA AA+ AE+ IDIN+GCP + IAK+G GS L D L +I+ A+ AV
Sbjct: 101 HRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGG-GSGLIRDPNLATQILEAVVDAV 159
Query: 482 SIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
SIP+T K R+ + + + L+ +G ++LT+H
Sbjct: 160 SIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLH 196
>UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Anaeromyxobacter|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 352
Score = 73.3 bits (172), Expect = 4e-12
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
++ +AP+ S+ +R +CRR GA+ YT M+ ++ A L ++ P VQ
Sbjct: 11 RYFLAPLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDREPDEDPFAVQ 70
Query: 299 FCGNNPEIMASAAKLA-EEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
+ P+++A A +A + ID+N+ CP G+ + D ++E V A+
Sbjct: 71 IFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAVRAIRA 130
Query: 476 AVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
AV +P+T K+R D + V+ A+ EA G + +H
Sbjct: 131 AVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALH 169
>UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 family;
n=2; Clostridiales|Rep: Putative TIM-barrel protein,
NifR3 family - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 318
Score = 73.3 bits (172), Expect = 4e-12
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Frame = +2
Query: 131 APMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGN 310
APM S+ A+R+L R G L + M+ + E RP+ VQ G+
Sbjct: 16 APMAGVSDKAYRVLARDFGCGLVCSEMVSDKGLVYGQGRTSKIADSSGEKRPVAVQIFGS 75
Query: 311 NPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
E MA+AA++ EE D IDIN+GCP I K G G+ L D + IV + + V
Sbjct: 76 EAESMATAARIVEEMGADIIDINMGCPTPKIVKNGE-GAALMLDITKSRGIVREVLRVVK 134
Query: 485 IPITCKVRIFEDIDKSVN---YAKMLEASGCKLLTVH 586
+P+T K+R D + S+N A+ LE G + +H
Sbjct: 135 VPVTVKMRKGWD-ENSINCLELAQKLEEEGVAAICLH 170
>UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2;
Methylobacterium extorquens PA1|Rep: Dihydrouridine
synthase, DuS - Methylobacterium extorquens PA1
Length = 354
Score = 73.3 bits (172), Expect = 4e-12
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDN---LVTCE 274
EL+ +F VAPM+D ++ CR L L++ + T A D L
Sbjct: 24 ELSGWRFSVAPMMDWTDRQ----CRAFHRTLSRRARLYTEMVTTGAVLHGDRERLLGFDA 79
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDA-IDINLGCPQSIAKRGRYGSFLQDDWELLK 451
++PL VQ G+NP+ +A+AA++A ++ A I++N+GCP + GR+G+ L + L+
Sbjct: 80 YEQPLAVQLGGSNPDDLAAAARIAADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVG 139
Query: 452 EIVTAMSKAVSIPITCKVRI---FEDIDKSVN-YAKMLEASGCKLLTVH 586
V A+ AV +P+T K R+ +DI+++++ A + A+G L VH
Sbjct: 140 ACVAALKAAVPVPVTVKCRLGVDDQDIEEALDAVADAVVAAGGDGLVVH 188
>UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Dihydrouridine synthase family protein - Candidatus
Desulfococcus oleovorans Hxd3
Length = 326
Score = 73.3 bits (172), Expect = 4e-12
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++AP+ ++ +R L + G L Y+ M+ S+ ++ L T E+ P VQ
Sbjct: 13 ILAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRTTPEEAPFAVQIF 72
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G P +M AA + + IDIN GC + I K G G+ L D L E++ A+ A
Sbjct: 73 GGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGA-GAALMKDLPLAAEVIQAVRDA 131
Query: 479 VSIPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
VSIP+T K+R + D S + A++ EA G + +H
Sbjct: 132 VSIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALH 169
>UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 496
Score = 73.3 bits (172), Expect = 4e-12
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVF----------TKDAKYRKDN--- 259
+ V+APMV L RLL +GA L ++P + T Y K
Sbjct: 109 KLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITYHKGQGPI 168
Query: 260 LVTCEEDRP-LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDD 436
T ++P LI Q +NPE+ AA+ ++ ID+N GCP+ + G+ L
Sbjct: 169 FSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGMGAALLST 228
Query: 437 WELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
ELL +I+ A+ ++ +PI+CK+R+ ++ A + +G + LTVH
Sbjct: 229 PELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRILRTGVRNLTVH 278
>UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 364
Score = 72.9 bits (171), Expect = 5e-12
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHG-ANLCYTPMLHSNVFT----KDAKYRKDNLVTCEE 277
+P + APM + A+R + R+ G A L T M+++ F +A++ +E
Sbjct: 27 DPPILQAPMAGFTNAAFRHIVRQFGGAGLLATEMVNARGFVWLDENEAEHPDRLWGVADE 86
Query: 278 DRPLIVQFCGNNPEIMASAA-KLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELL 448
RPL VQ N+PE MA +LAEEY +DIN GCP + + ++ GS+L + +
Sbjct: 87 PRPLAVQIWDNDPETMAKVGRRLAEEYRVSVVDINFGCPVRQVTEKAHSGSYLLREPNRM 146
Query: 449 KEIVTAMSKAVS-IPITCKVRI---FEDIDKSVNYAKMLEASGCKLLTVH 586
I++ + + + P+T K+R+ E+I+ + A+++E +G LTVH
Sbjct: 147 HAIISRLVQVCAPTPVTAKIRLGCSRENINCN-EIARVVEEAGAAALTVH 195
>UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome B of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 374
Score = 72.9 bits (171), Expect = 5e-12
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT---------- 268
+ +APMV + E+ RL+ R+GA+L +TP + K + D+L T
Sbjct: 7 KLALAPMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLDPNKKV 66
Query: 269 ------CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFL- 427
EE LI Q +PE+ AAK+ + D ID+N GCP+ + G+ L
Sbjct: 67 VFRTYPAEELGKLIFQIGSADPELAVQAAKIVAQDVDGIDLNCGCPKPFSTHSGMGAALL 126
Query: 428 --QDDWEL-LKEIVTAMSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
D EL L+ +V+ + K IPI+ K+R+ +D D S+ L +G LT+H
Sbjct: 127 TTPDLLELILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRLCKTGISNLTLH 184
>UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1;
Ostreococcus tauri|Rep: tRNA-dihydrouridine synthase -
Ostreococcus tauri
Length = 639
Score = 72.1 bits (169), Expect = 9e-12
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPM-LHSNVFTKDAKYRKDNLVTCEE-DRPLIVQF 301
VAP+ L +R +C GA++ + M + SN+ D K + LV ++ +Q
Sbjct: 273 VAPLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRK--EWALVRRHPIEKCFGIQI 330
Query: 302 CGNNPEIMASAAKLA--EEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMS 472
CG P++M A+L E +CD ID+N+GCP + +G GS ++D + LK +V +M+
Sbjct: 331 CGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDT-DRLKRVVRSMT 389
Query: 473 KAVSIPITCKVRI--FEDIDKSVNYAKMLEAS--GCKLLTVH 586
S P+T K+R+ F+D + V + + +A G T+H
Sbjct: 390 SVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAATLH 431
>UniRef50_Q5LQV9 Cluster: TRNA-dihydrouridine synthase A; n=46;
Bacteria|Rep: TRNA-dihydrouridine synthase A -
Silicibacter pomeroyi
Length = 344
Score = 71.7 bits (168), Expect = 1e-11
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Frame = +2
Query: 131 APMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE---EDRPLIVQF 301
APM+D ++ R L R L +L++ + T A R L E E+ P+ +Q
Sbjct: 16 APMMDWTDRHCRYLHRL----LSRQTLLYTEMVTAPALVRGGALHLLEYSVEEHPVALQL 71
Query: 302 CGNNPEIMASAAKL-AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G++PE +A AA+L AE D I++N GCP + G +G+ L L+ + VTAM +A
Sbjct: 72 GGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVADCVTAMREA 131
Query: 479 VSIPITCKVRI-FEDIDKSVNYAKMLE---ASGCKLLTVH 586
V + +T K RI +D D + LE +GC+ + +H
Sbjct: 132 VDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIH 171
>UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 361
Score = 71.7 bits (168), Expect = 1e-11
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
VAP+ L +R +C GA++ + M ++ K + L ++ +Q CG
Sbjct: 12 VAPLTTVGNLPFRRVCTDLGADITVSEMAMASNLLKGDRKEWALLRRHPSEKCYGIQVCG 71
Query: 308 NNPEIMASAAKLA--EEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
P++MA A+L E CD ID+N+GCP + +G GS L D + LK +V M+
Sbjct: 72 GYPDLMARCAELIDNEVSCDFIDVNMGCPIDGVCAKGA-GSSLMRDTDRLKNVVRTMAAV 130
Query: 479 VSIPITCKVRI--FEDIDKSV 535
S P+T K+R+ F+D K V
Sbjct: 131 SSTPVTIKLRMGYFDDPSKYV 151
>UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 345
Score = 71.3 bits (167), Expect = 2e-11
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTP------------MLHSNVFTKDAKYRKDNLV- 265
V APMV S LA RLL +GA+L Y +L+ + + D K L
Sbjct: 16 VCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKELGSVDFIDAKGTLTF 75
Query: 266 -TCEEDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDW 439
T E+R +V G + A +A+L AID+N+GCP+ + G G+ L
Sbjct: 76 RTVPEERERVVFQVGTSSAASALKSAELVARDVAAIDVNMGCPKHFSTSGGMGARLLSQP 135
Query: 440 ELLKEIVTAMSKAV--SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
EL+++I+T + + + + +TCK+R+ E ++ AKM+E+ G VH
Sbjct: 136 ELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMIESCGVSAFAVH 186
>UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=31; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
1 - Bacillus subtilis
Length = 333
Score = 71.3 bits (167), Expect = 2e-11
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
+L N + V+APM A+RL + GA L M+ + L E ++
Sbjct: 8 QLKN-RVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREK 66
Query: 284 PLIVQFCGNNPEIMASAAKLAEE--YCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKE 454
PL +Q G E + AAK ++ D IDIN+GCP I K +L D + + E
Sbjct: 67 PLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDP-DKIYE 125
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
+V+A+ AV+ P+T K+R+ D D +V A+ +E +G K + +H
Sbjct: 126 MVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALH 171
>UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Nasonia vitripennis
Length = 505
Score = 70.9 bits (166), Expect = 2e-11
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 17/197 (8%)
Frame = +2
Query: 47 KKIIIRLVNNNYIMANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPML---- 214
K +++ L+ Y +A+ + ++APMV L RLL +GA++ YT L
Sbjct: 34 KTLLLSLLLRRYSLASRPRLTYADKLIMAPMVRIGTLPMRLLALEYGADIVYTEELIDWK 93
Query: 215 --------HSNVFTKDAKYRKDNLVT-----CEEDRPLIVQFCGNNPEIMASAAKLAEEY 355
+ + T D R D + E DR +++Q + AKL E+
Sbjct: 94 LLRSVRRVNEVLGTVDYIDRTDGTIVFRTSPIERDR-VVLQLGTCDANRALKVAKLVEQD 152
Query: 356 CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSV 535
ID+N+GCP+ + G G+ L E EI+ + +SIP+TCK+R+ +++ ++
Sbjct: 153 VAGIDVNMGCPKRFSILGGMGAALLKQPEKASEILRTLVGGLSIPVTCKIRVLGNVEDTL 212
Query: 536 NYAKMLEASGCKLLTVH 586
L +G +TVH
Sbjct: 213 KLVDTLVDTGISAITVH 229
>UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep:
Lmo0227 protein - Listeria monocytogenes
Length = 331
Score = 70.9 bits (166), Expect = 2e-11
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEED 280
E+ N Q VVAPM S A+RL + GA L C + + ++AK D L E++
Sbjct: 8 EIKN-QVVVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAK-TLDMLYIDEKE 65
Query: 281 RPLIVQFCGNNPEIMASAAKLAEE--YCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
+PL +Q G E + AAK E D IDIN+GCP + + G+ D + +
Sbjct: 66 KPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKVYD 125
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
+V A+ AV P+T K+RI D + ++ A E +G + +H
Sbjct: 126 MVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAAERAGAAAVAMH 171
>UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 330
Score = 70.9 bits (166), Expect = 2e-11
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+APM + R +HG +L T + + + K +V D PL VQ
Sbjct: 11 LAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQIVK-SGDIPLSVQIM 69
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
GNN E+MA +AKL + DA+D+N+GCP A +G GS + D +L +++ +M + V
Sbjct: 70 GNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLASMREQV 129
Query: 482 SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
++ K+R F++ + + + SG L VH
Sbjct: 130 PCALSAKIRAGFDNKEGVFEILQAIVDSGADYLAVH 165
>UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 355
Score = 70.9 bits (166), Expect = 2e-11
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRR-HGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
++ +AP+ ++ A+R+ R G LC T ++ ++ ++ K L T DRPL +
Sbjct: 24 RYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLTTSPADRPLTI 83
Query: 296 Q-FCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q F G E++A+A L + A+D+N+GCP + G+ + + ++V +
Sbjct: 84 QIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVAEVV 143
Query: 473 KAVSIPITCKVRIFEDIDK--SVNYAKMLEASGCKLLTVH 586
AVSIP+T K+R+ D D + A+ E +G +TVH
Sbjct: 144 DAVSIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVH 183
>UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep:
CG1434-PA - Drosophila melanogaster (Fruit fly)
Length = 473
Score = 70.5 bits (165), Expect = 3e-11
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPML------------HSNVFTKDAKYRKDNL 262
+ ++APMV L RLL GA++ YT L + + T D D
Sbjct: 25 KLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVDPSDGT 84
Query: 263 V---TC-EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQ 430
+ TC +E L++Q ++ + KL + +DIN+GCP+ + +G G+ L
Sbjct: 85 IVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALL 144
Query: 431 DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
D + I+ + + IP+TCK+RI D++ +++ + L A+G + +H
Sbjct: 145 ADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIH 196
>UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1;
Saccharophagus degradans 2-40|Rep: Dihydrouridine
synthase, DuS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 318
Score = 70.1 bits (164), Expect = 4e-11
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMAS-AAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ VQ G+NP +A+ AA+ AE AID+N GCP R + G+ L D+ + + +IV
Sbjct: 69 PVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDETDTVFDIV 128
Query: 461 TAMSKA--VSIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
A+ KA S P+T K+R+ + + D + AK +EA+G L VH
Sbjct: 129 NAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELCVH 173
>UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4;
Desulfovibrionaceae|Rep: Dihydrouridine synthase, DuS -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 449
Score = 70.1 bits (164), Expect = 4e-11
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+AP+ S+L++RLLCR+ GA +C T M+ + + +D L T ED PL+VQ G
Sbjct: 36 LAPLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLFG 95
Query: 308 NNPEIMASAAK-LAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
+P+IM A + L E+ D+N+GC + K G + L+D + L + A
Sbjct: 96 CDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRTAG 155
Query: 482 SIPITCKVRIFEDIDKSV--NYAKMLEASGCKLLTVH 586
+ + K R+ D+ + V + + L G +T+H
Sbjct: 156 AGRVGFKFRLGWDVGQEVWADLGRALADLGAGWVTLH 192
>UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01258.1 - Gibberella zeae PH-1
Length = 362
Score = 68.9 bits (161), Expect = 8e-11
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Frame = +2
Query: 122 FVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR--PLIV 295
+ +APMV +LA+R ++G +LC++PM+ + F + + R + E + P IV
Sbjct: 27 YALAPMVRYGKLAFRQTVHKYGVDLCWSPMILAKEFNRSSFARDSDWSFSTEPKQPPTIV 86
Query: 296 QFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
QF N P +A A+ L +D+N GCPQS A G+ L + EL++++V
Sbjct: 87 QFGANVPLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRELVRDMV 141
>UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
tRNA-dihydrouridine synthase - Hyphomonas neptunium
(strain ATCC 15444)
Length = 345
Score = 68.5 bits (160), Expect = 1e-10
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLV-TCEEDRP-- 286
P+ +APM A++ R GA + M+ + AK R D + TC +
Sbjct: 21 PRVWLAPMSGATDAPMRRQAVHFGAPAVVSEMVAGEML---AKARADVVRRTCRHEGAGY 77
Query: 287 LIVQFCGNNPE-IMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV- 460
IVQ PE ++A A +AE D IDIN+GCP G+ GS L D L EI+
Sbjct: 78 WIVQLAARRPEDMLAGAVLMAEAGVDVIDINMGCPSKQVTGGQSGSALMRDLPLAGEIID 137
Query: 461 TAMSKAVSIPITCKVRIFEDIDKSVN---YAKMLEASGCKLLTVH 586
A+ A P+T K+R+ D D+++N A M + G ++LTVH
Sbjct: 138 AALQGAAGRPVTLKMRLGWD-DENLNAPELAVMAQDRGVQMLTVH 181
>UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: Dihydrouridine
synthase, DuS - Polynucleobacter sp. QLW-P1DMWA-1
Length = 347
Score = 68.5 bits (160), Expect = 1e-10
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Frame = +2
Query: 173 CRRHGANLCYTPMLHSNVFTKDAKYRKD---NLVTCEEDRPLIVQFCGNNPEIMASAAKL 343
CR L +L++ + T A D +L ++ P+++Q G+ P +A +A+L
Sbjct: 9 CRSFHRALTTEAVLYTEMVTTGALMHGDVPRHLDYSQDQHPVVLQLGGSEPNDLARSAEL 68
Query: 344 AEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFED 520
A+++ D ID+N GCP +RG +G+ L + +L+ + V AM AV IPI+ K R+ D
Sbjct: 69 AQQWGYDEIDLNCGCPSERVQRGAFGACLMAEPKLVADCVKAMQNAVDIPISVKHRLGLD 128
Query: 521 IDKSVNYAK 547
+ N K
Sbjct: 129 SMDAANSEK 137
>UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase A -
Xylella fastidiosa
Length = 340
Score = 68.1 bits (159), Expect = 1e-10
Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
VAPM++ ++ R+ R + YT M+H+ + R + E+ P+ +Q
Sbjct: 20 VAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFASVEQ--PVALQLG 77
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G+ P ++A AA++A ++ I++N GCP + G +G+ L + L+ + V AM+ V
Sbjct: 78 GSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVADCVAAMAAVV 137
Query: 482 SIPIT--CKVRIFEDIDKSVNYAKMLE----ASGCKLLTVH 586
S+P+T C++ + ED D +AK ++ AS +++ VH
Sbjct: 138 SVPVTVKCRLGVNEDDDYG-RFAKFVDWVSRASSSRMIVVH 177
>UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase;
n=4; Rhizobiales|Rep: Putative tRNA-dihydrouridine
synthase - Bradyrhizobium sp. (strain ORS278)
Length = 317
Score = 67.7 bits (158), Expect = 2e-10
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR--PLIVQFCGN 310
M ++ +R L GA L + M S+ + R + + CE P +VQ G
Sbjct: 1 MSGITDAPFRRLAAELGAGLVVSEMTASDDLVRG---RWISRLRCEAGGIGPHVVQLAGC 57
Query: 311 NPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSI 487
MA AK+A + D IDIN+GCP G+ GS L D + ++ A +AV +
Sbjct: 58 EAHWMAEGAKVAADGGADIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEATVEAVDV 117
Query: 488 PITCKVRIFEDIDKSVN---YAKMLEASGCKLLTVH 586
P+T K+R+ D ++S+N A+ EA+G +L+TVH
Sbjct: 118 PVTLKMRLGWD-ERSLNAPELARRAEAAGVQLITVH 152
>UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 402
Score = 67.7 bits (158), Expect = 2e-10
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT----------C- 271
++APMV R+L +G ++ Y+ L K + + L T C
Sbjct: 35 IMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIAKDQTLCY 94
Query: 272 ---EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWE 442
E+D ++Q + AAK+ A+DIN+GCP+ + +G GS L E
Sbjct: 95 RTSEKDVRNVLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGMGSALLSKPE 154
Query: 443 LLKEIVTAMSKAVS-IPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+K+I+T + + ++ IPITCK+R+ ++++ +++E++G + VH
Sbjct: 155 TIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVH 203
>UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Acidobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Acidobacteria bacterium
(strain Ellin345)
Length = 370
Score = 66.9 bits (156), Expect = 3e-10
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRR-HGANLCYTPMLHSNVFTK--DAKYRKDNLVTCEEDRP 286
P V+APM ++ +R R G L T ++ + +AK R+ L +RP
Sbjct: 32 PATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARR-YLTFYGNERP 90
Query: 287 LIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVT 463
+ Q G++ E +A AAK+ ++ D +D+NLGCP + GS L D +K I
Sbjct: 91 ISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIFE 150
Query: 464 AMSKAVSIPITCKVRIFEDIDKSV--NYAKMLEASGCKLLTVH 586
++ KAV+IP T K R + + V AK+ E G + +H
Sbjct: 151 SVRKAVTIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMH 193
>UniRef50_Q7XWZ9 Cluster: OSJNBa0079F16.4 protein; n=8; Oryza
sativa|Rep: OSJNBa0079F16.4 protein - Oryza sativa
(Rice)
Length = 1708
Score = 66.9 bits (156), Expect = 3e-10
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P F VAPM+D ++ +R L R + YT M+ + L E P++
Sbjct: 63 PLFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIV 122
Query: 293 VQFCGNNPEIMASAAKLAEEYC-DAIDINLGCPQ-SIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G+N + +A A +LA Y D I++N GCP +A G +G+ L D E + + ++A
Sbjct: 123 LQIGGSNLDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSA 182
Query: 467 MSKAVSIPITCKVRIFEDIDKSVNYAKMLE 556
++ ++P++ K RI +D +Y ++ E
Sbjct: 183 IAANCNVPVSVKCRI--GVDDRDSYEELCE 210
>UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 433
Score = 66.9 bits (156), Expect = 3e-10
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE----------- 274
+APMV + EL RLL R+G +L +TP L + + L T +
Sbjct: 10 LAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIVSNHQQSDK 69
Query: 275 ----------EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSF 424
E LI+Q ++P++ AA+ + D ID+N GCP++ + G+
Sbjct: 70 KTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFSTHSGMGAE 129
Query: 425 LQDDWELLKEIVTAMSKAVSIP----ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
L + L I+ + + + IP I+CK+R+F + D+S N + + +G LT+H
Sbjct: 130 LLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIH 187
>UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Psychroflexus torquis ATCC 700755|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Psychroflexus torquis ATCC 700755
Length = 338
Score = 66.5 bits (155), Expect = 4e-10
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+APM ++LA+RLL + GA+ T ++ T+ + T ++P I Q G
Sbjct: 16 LAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQIFG 75
Query: 308 NNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSI 487
+ MA + E+ D IDIN GCP R G+ L D + + +V ++ ++
Sbjct: 76 GDISEMAKTVGMLEDRSDVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCIESTNV 135
Query: 488 PITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
PIT K+R+ + ++ +K L G + VH
Sbjct: 136 PITVKMRLGTGSGPNTALEISKRLADEGVMRICVH 170
>UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7;
Chlamydiaceae|Rep: Predicted oxidoreductase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 335
Score = 66.1 bits (154), Expect = 6e-10
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED-RPLIVQF 301
V AP+ S+ +R + + L + M+ A R L+ E+ RP+ Q
Sbjct: 17 VYAPLAGFSDYPYRCMSALYQPGLMFCEMVKVEGILY-APERTSKLLDYNENMRPIGAQL 75
Query: 302 CGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
CG+NPE AAK+ E D ID+N GCP + GS L EL+ I+ + +
Sbjct: 76 CGSNPETSGEAAKILEGLGFDLIDLNCGCPTDKITKDGSGSGLLKTPELIGRILDKIINS 135
Query: 479 VSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
VSIP+T K+R D++ + +++ +G + VH
Sbjct: 136 VSIPVTVKIRSGWDMEHINVEDTVRIIRDAGASAVFVH 173
>UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN
family; n=4; Legionella pneumophila|Rep: Zinc binding
TIM barrel protein, YjbN family - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 334
Score = 65.7 bits (153), Expect = 8e-10
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+APM+D + +R L R N L YT M + + L + PL +Q
Sbjct: 15 IAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQNNPDRA---LYFNSVEHPLAIQLG 71
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G + + A +AE+ + I++NLGCP + GR+G+ L + E + + + A+ + V
Sbjct: 72 GADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQVV 131
Query: 482 SIPITCKVRIFEDIDKSVNYAKM----LEASGCKLLTVH 586
IP+T K RI D S + + L +GC L +H
Sbjct: 132 GIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAGCDKLIIH 170
>UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2;
Betaproteobacteria|Rep: Dihydrouridine synthase, DuS -
Dechloromonas aromatica (strain RCB)
Length = 319
Score = 65.7 bits (153), Expect = 8e-10
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ VQ G++P MA +A +L +D+N GCP R R GS L + ELL EI
Sbjct: 65 PMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNEIT 124
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+A+ V IP T K+R+ +D ++++ A+ LEA+G L VH
Sbjct: 125 SAVRSVVPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINELIVH 169
>UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 307
Score = 65.7 bits (153), Expect = 8e-10
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Frame = +2
Query: 137 MVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNP 316
M +++A+R +CR GA T M+ + K L E + P Q G++
Sbjct: 1 MAGVTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSDE 60
Query: 317 EIMASAAKLAEEY--CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSI 487
+ M AA +A E D IDIN+GCP +A G ++D + ++ + A
Sbjct: 61 KCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGER 120
Query: 488 PITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
P+T K R+ D V +AK +EA+G + VH
Sbjct: 121 PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVH 155
>UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 365
Score = 65.7 bits (153), Expect = 8e-10
Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRR-HGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+++++P+ + L +R + R G L T ++++ + ++ TC ED P V
Sbjct: 29 RYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPEDSPFAV 88
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q G+ P+ M AA+L E +IDIN+GCP + +G G+ + +V +
Sbjct: 89 QIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSLVQTVV 148
Query: 473 KAVSIPITCKVRI-FEDIDKSVN-YAKMLEASGCKLLTVH 586
+AV IP++ K+R+ ++D + S +++ E G + +H
Sbjct: 149 EAVKIPVSVKMRLGWDDSELSAPFFSREFEKVGVVAVAIH 188
>UniRef50_UPI0000DAE45A Cluster: hypothetical protein
Rgryl_01000346; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000346 - Rickettsiella
grylli
Length = 330
Score = 65.3 bits (152), Expect = 1e-09
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Frame = +2
Query: 161 WRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE-EDRPLIVQFCGNNPEIMASAA 337
+RL+C++ A L YT M + K ++ L+T + ++ L +Q G ++ AA
Sbjct: 29 FRLICKK--AQL-YTEMFTAQAILKSPA--RERLLTVDANEKALAIQLGGGIASDLSKAA 83
Query: 338 KLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIF 514
K+ E Y I++N+GCP + G +G L + + + + AM V +P+T K RI
Sbjct: 84 KIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNRVADAIAAMKAVVRLPVTVKTRIG 143
Query: 515 EDIDKSVNY----AKMLEASGCKLLTVH 586
D D+S +Y + + +GC +H
Sbjct: 144 VDNDESYDYLASFIRQVSLAGCDTFIIH 171
>UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;
n=1; alpha proteobacterium HTCC2255|Rep:
tRNA-dihydrouridine synthase, putative - alpha
proteobacterium HTCC2255
Length = 324
Score = 65.3 bits (152), Expect = 1e-09
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 3/161 (1%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
+P +++P+ ++L +R L GA L + M+ S+ + K +
Sbjct: 8 SPPVLLSPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQKGKDARARAELGFNVEGTS 67
Query: 293 VQFCGNNPEIMASAAKLAE-EYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
VQ G + M+ AKL E IDIN+GCP G GS L +L +++ A+
Sbjct: 68 VQIAGRDAFWMSECAKLIEGNGAKIIDINMGCPAKSVVNGASGSALMRTPDLALKLIEAV 127
Query: 470 SKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
AV IP+T K R+ D + + + + E G +++T+H
Sbjct: 128 VNAVDIPVTLKTRLGWDHNDLNAADLSSSAEKIGIQMITIH 168
>UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1;
Dichelobacter nodosus VCS1703A|Rep: TRNA-dihydrouridine
synthase A - Dichelobacter nodosus (strain VCS1703A)
Length = 335
Score = 65.3 bits (152), Expect = 1e-09
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKD--NLVTCEEDRPLI 292
+F VAPM+D + A CR+ L L+S + T A D +T + D P
Sbjct: 8 RFCVAPMMDWTTPA----CRQIHRILLPKARLYSEMITTGAILFGDAQRYLTHQNDEPCA 63
Query: 293 VQFCGNNPEIMASAAKLAEEYCDA-IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
+Q G+NP+ +A A +A+ Y A +++N+GCP + + G+ L L+ + +TAM
Sbjct: 64 LQLGGSNPDELARATAIAQSYHYAEMNLNVGCPSDRVQNNQIGACLMKSPRLVAQCLTAM 123
Query: 470 SKAVSIPITCKVRI-FEDIDKSVNY---AKMLEASGCKLLTVH 586
K +P++ K R+ ++ D+ + + ++ + S C++ VH
Sbjct: 124 QKESDVPVSIKHRLGIDEQDEHLVFDFVDQISQESPCRIFIVH 166
>UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3;
Gammaproteobacteria|Rep: Putative uncharacterized
protein - Marinobacter sp. ELB17
Length = 335
Score = 65.3 bits (152), Expect = 1e-09
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Frame = +2
Query: 209 MLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMAS-AAKLAEEYCDAIDINLGC 385
ML +F K A +N +T P+ VQ G++P +MA AK AE +DIN GC
Sbjct: 40 MLPPRIFYKYAPELHNNSLT-RVGVPVAVQLLGSDPHMMARHGAKAAELGATQVDINFGC 98
Query: 386 PQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLE 556
P + + G L + EL+ EI A+ +AV I +T K+R+ ++D V A+ L+
Sbjct: 99 PAKTVNKHKGGCVLMREPELMHEITAAVRQAVPADILVTAKMRLGYDDRSMGVACAQALD 158
Query: 557 ASGCKLLTVH 586
A+G + +H
Sbjct: 159 AAGAGEIVIH 168
>UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3;
Alteromonadales|Rep: Dihydrouridine synthase, DuS -
Psychromonas ingrahamii (strain 37)
Length = 314
Score = 65.3 bits (152), Expect = 1e-09
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Frame = +2
Query: 119 QFVVAPMVDASELAWR-LLCRRHGANLCYTPMLHSNVFTKDAK-YRKDNLVTCEEDR--- 283
Q +APM + R LL G +LC T + AK YR+ + + +
Sbjct: 2 QITLAPMEGVMDHQMRQLLTAIGGYDLCITEFIRVVDMQLPAKVYRRHSPELYNDSKTAS 61
Query: 284 --PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
P+ +Q G NP+ +A A A D ID+N GCP + + G+ L E L +
Sbjct: 62 GTPVRIQLLGQNPQCLAENAHQAISIGSDGIDLNFGCPAKTVNKNKGGAVLLKSPEALYQ 121
Query: 455 IVTAMSKAVSIPITCKVRI---FEDIDKSVNYAKMLEASGCKLLTVH 586
IVT + KAV + T V+I +ED ++ A+ ++A+G L VH
Sbjct: 122 IVTEVRKAVPVFQTLSVKIRLGYEDKSLAIENAQAIQAAGADELAVH 168
>UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 297
Score = 64.9 bits (151), Expect = 1e-09
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ Q CG+ P I AAK+ EE D +D+N GCP + GS L EL+ EIV
Sbjct: 26 PIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIV 85
Query: 461 TAMSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
M AV IP+T K+R D + N +++E +G + + +H
Sbjct: 86 CNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIH 129
>UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;
n=3; Desulfovibrio|Rep: Dihydrouridine synthase family
protein - Desulfovibrio desulfuricans (strain G20)
Length = 376
Score = 64.9 bits (151), Expect = 1e-09
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP- 286
N + +APM +A+R + G L +T M + + R E+ P
Sbjct: 56 NGRLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFSWRPEELPA 115
Query: 287 LIVQFCGNNPEIMASAAKLAE-EYCDAIDINLGCPQS-IAKRGRYGSFLQDDWELLKEIV 460
L+ Q G +P+ MA+AA+ E E +DIN+GC + I K+G G+ L D E +V
Sbjct: 116 LVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKG-CGADLLRDPERAVRMV 174
Query: 461 TAMSKAVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
A+ +AVS+P+ K+R D + +VN A+ L+ +G L H
Sbjct: 175 DAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFH 218
>UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=20;
Streptococcus|Rep: Possible transcriptional regulator -
Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311)
Length = 350
Score = 64.5 bits (150), Expect = 2e-09
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 3/186 (1%)
Frame = +2
Query: 38 LSYKKIIIRLVNNNYIMANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLH 217
L+++ + +N+++++ N E+ + + V+APM + A+R + + A L M+
Sbjct: 19 LTWRNSSMTKLNSSFMIGN--VEIPH-RTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMIS 75
Query: 218 SNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEY--CDAIDINLGCPQ 391
+ + L E + P+ +Q G + E + AA + D +DIN+GCP
Sbjct: 76 EKGLLYNNEKTLHMLHIDENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPV 135
Query: 392 SIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGC 568
+ + G+ D + + IV ++ + IP+T K+R + D D +V A E++G
Sbjct: 136 NKVVKNEAGAKWLKDPDKIYHIVKEVTSVLDIPLTVKMRTGWSDSDLAVENALAAESAGV 195
Query: 569 KLLTVH 586
L +H
Sbjct: 196 SALAMH 201
>UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 504
Score = 64.1 bits (149), Expect = 2e-09
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 30/183 (16%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTP-----------------------MLHSNVFTKD 238
+APMV + EL RLL R+G +L ++P ++ +N
Sbjct: 15 LAPMVRSGELPIRLLALRYGCDLVWSPEYIDRKIIQTQRRVNAELNTIDYIIPNNKDPSK 74
Query: 239 AKYRKDNLVTC---EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRG 409
K+ +DN+V EE LI Q + PE+ AA E D ID+N GCP+S + G
Sbjct: 75 MKHNQDNVVFRKHPEETGKLIFQLGTSTPELAVEAALRVIEDVDGIDLNCGCPKSFSTHG 134
Query: 410 RYGSFLQDDWELLKEIVTAMSKAV----SIPITCKVRIFEDIDKSVNYAKMLEASGCKLL 577
G+ L ++L I+ A+ + V PI+CK+R+ + + S + + +G + L
Sbjct: 135 GMGAELLKTPDILCSILRALVEKVGNPNKKPISCKIRLLPNFEASKLLIEQICQTGIRNL 194
Query: 578 TVH 586
T+H
Sbjct: 195 TIH 197
>UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=15; Cyanobacteria|Rep: Probable tRNA-dihydrouridine
synthase 1 - Synechocystis sp. (strain PCC 6803)
Length = 355
Score = 64.1 bits (149), Expect = 2e-09
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Frame = +2
Query: 131 APMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+P+ ++L +R L RR+ + YT M+ + + + + P+ +Q
Sbjct: 47 SPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEI-HHLRTLPQVMEIDPRENPISIQLFD 105
Query: 308 NNPEIMASAA-KLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
P+ MA AA K + ++DIN+GCP I K+G S L+ + + IV + AV
Sbjct: 106 CRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQP-AVAEAIVKTVVAAV 164
Query: 482 SIPITCKVRI-FEDID-KSVNYAKMLEASGCKLLTVH 586
+P+T K R+ ++D + V +A+ L+ +G ++LT+H
Sbjct: 165 DVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLH 201
>UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase;
n=5; Moraxellaceae|Rep: Possible tRNA-dihydrouridine
synthase - Psychrobacter arcticum
Length = 350
Score = 63.3 bits (147), Expect = 4e-09
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Frame = +2
Query: 293 VQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
+Q G+ ++MA +AA E AIDIN GCP R GS L D+ E++ +I++A+
Sbjct: 102 IQLLGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEVMYDIISAV 161
Query: 470 SKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+AV +IP++ K+R+ + D + + + ASG LT+H
Sbjct: 162 RQAVPANIPVSAKIRLGYTDTSRMDDIRGAIAASGADWLTIH 203
>UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep:
H0613H07.1 protein - Oryza sativa (Rice)
Length = 685
Score = 63.3 bits (147), Expect = 4e-09
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQF 301
+AP+ L +R LC+ GA++ C + +N+ A + L+ L VQ
Sbjct: 336 LAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQAS--EWALLRRHSSEDLFGVQI 393
Query: 302 CGNNPEIMASAAKLAEEYC--DAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
CG P+ +A +L + C D IDIN+GCP I GS L +K IV A S
Sbjct: 394 CGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAAST 453
Query: 476 AVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
P+T KVR FE +++ + + G +TVH
Sbjct: 454 VTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVH 492
>UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase;
n=41; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
- Staphylococcus aureus (strain COL)
Length = 328
Score = 63.3 bits (147), Expect = 4e-09
Identities = 45/171 (26%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Frame = +2
Query: 92 NWIFELNNPQFVVAPMVDASELAWR-LLCRRHGANLCYTPMLHSNVFTKDAKYR--KDNL 262
N+ EL P F++APM D +++ +R ++ ++ +T ++ F + L
Sbjct: 4 NFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRL 63
Query: 263 VTCEEDRPLIVQFCGNNPE-IMASAAKLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDD 436
E+++P++ G+ PE ++ +LA+ ID+N+GCP ++AK+G+ GS L
Sbjct: 64 TFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILR 122
Query: 437 WELLKEIVTAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
++ EI+ A +KA +P++ K R+ + +ID+ ++ K + L++H
Sbjct: 123 PDVAAEIIQA-TKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIH 172
>UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Pseudomonas syringae pv. tomato
Length = 317
Score = 62.9 bits (146), Expect = 5e-09
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
PL +Q G++P +A A A E +D+N GCP R R G+ L + ELL IV
Sbjct: 64 PLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIV 123
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ + +AV IP+T K+R+ +E+ D +++ A+ L G + VH
Sbjct: 124 SQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVH 168
>UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781
protein; n=3; Deuterostomia|Rep: PREDICTED: similar to
MGC53781 protein - Strongylocentrotus purpuratus
Length = 655
Score = 62.5 bits (145), Expect = 7e-09
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ ++AP+ L +R +C++ GA++ M + L + VQ
Sbjct: 283 KLLLAPLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQ 342
Query: 299 FCGNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
CG P+ M A+L + D IDIN+GCP + GS L + +EIV MS
Sbjct: 343 LCGGFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMS 402
Query: 473 KAVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
+ IP+T K+R + D + + + G ++TVH
Sbjct: 403 SVLDIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVH 442
>UniRef50_Q9FI41 Cluster: Emb|CAB87804.1; n=7; Magnoliophyta|Rep:
Emb|CAB87804.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 387
Score = 62.5 bits (145), Expect = 7e-09
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P F +APM+ ++ +R L R + YT ML + L + P++
Sbjct: 10 PLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIV 69
Query: 293 VQFCGNNPEIMASAAKLAEEYC-DAIDINLGCPQ-SIAKRGRYGSFLQDDWELLKEIVTA 466
+Q G N E +A A +LA Y D I+ N GCP ++ RG +G+ L D + + E ++
Sbjct: 70 LQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSV 129
Query: 467 MSKAVSIPITCKVRIFEDIDKSVN 538
++ + +T K RI D S N
Sbjct: 130 IAANTNAAVTVKCRIGVDDHDSYN 153
>UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 570
Score = 62.1 bits (144), Expect = 9e-09
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQF 301
+AP+ L +R +C+++GA++ C + +N+ + + LV + VQ
Sbjct: 222 LAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLL--QGQQSEWALVKRHSSEDIFGVQL 279
Query: 302 CGNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
CG P+ M A+L ++ D IDIN GCP + GS L + L++IV M
Sbjct: 280 CGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKGKLQQIVQGMKS 339
Query: 476 AVSIPITCKVRI-FEDIDKSVNYAKM---LEASGCKLLTVH 586
+ IP+T K+R D + N K+ L G ++T+H
Sbjct: 340 VIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIH 380
>UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1;
uncultured Acidobacteria bacterium|Rep: Putative
uncharacterized protein - uncultured Acidobacteria
bacterium
Length = 355
Score = 61.7 bits (143), Expect = 1e-08
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQFC 304
+APM S L +R LC GA + + M + K + + L+ P VQ
Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARRL-KQKRNSEFALIRRFPGEPCFGVQLA 59
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
GN P+ A AA L E D +DIN GCP R G+ + + ++ +V A+ +V
Sbjct: 60 GNKPDETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSV 119
Query: 482 -SIPITCKVRI-FEDIDKSVNYAKMLEAS---GCKLLTVH 586
+IP+T K+R+ + D D+ NY + +A+ G L VH
Sbjct: 120 TNIPVTAKIRLGWNDDDR--NYLQQAQAAVDGGAAALFVH 157
>UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 394
Score = 61.7 bits (143), Expect = 1e-08
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTP------MLHS----NVFTKDAKY------- 247
+ V+APMV + E RLL ++GA+L ++P ML N TK +
Sbjct: 7 KLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFTVSQQGK 66
Query: 248 ---RKDNLV--TCEEDRPLIVQFCGN-NPEIMASAAKLAEEYCDAIDINLGCPQSIAKRG 409
K ++ T E +R I+ G+ NPEI +A K+ + ID+N GCP+ +
Sbjct: 67 GNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPKHFSMHA 126
Query: 410 RYGSFLQDDWELLKEIVTAMSKAVSIP----ITCKVRIFEDIDKSVNYAKMLEASGCKLL 577
G+ L + L I+ A+ K V P I+ K+R+ E +K++ L +G K L
Sbjct: 127 GMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLAQTGVKNL 186
Query: 578 TVH 586
T+H
Sbjct: 187 TIH 189
>UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus2 - Schizosaccharomyces pombe (Fission
yeast)
Length = 479
Score = 61.7 bits (143), Expect = 1e-08
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRK--DNLVTCE--------- 274
+APMV EL RLL R+GANL + P + + ++ + C
Sbjct: 12 LAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCIDFVKPPSNK 71
Query: 275 --------EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFL- 427
E LI Q +PE+ AAKL ID+N GCP+ + G+ L
Sbjct: 72 VLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLL 131
Query: 428 --QDDW-ELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
QD +L +V + K I I+CK+R+ E + ++ + + +G + +TVH
Sbjct: 132 KNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVH 187
>UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase;
n=2; Treponema|Rep: Probable tRNA-dihydrouridine
synthase - Treponema pallidum
Length = 340
Score = 61.7 bits (143), Expect = 1e-08
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Frame = +2
Query: 131 APMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGN 310
AP+ S+ A+R + A+ YT M+ S +D+ K + + +Q G+
Sbjct: 24 APVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRRASNETHYAIQIFGS 83
Query: 311 NPEIMASAAKLAEEYC--DAIDINLGCPQ-SIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
NP +MA AKL + IDIN GCP I K G G+ L + L E+V A++ AV
Sbjct: 84 NPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGA-GAALTREPTRLYEVVKAVADAV 142
Query: 482 -----SIPITCKVR 508
IP+T K+R
Sbjct: 143 YAQDARIPVTVKIR 156
>UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG10463-PA - Nasonia vitripennis
Length = 584
Score = 61.3 bits (142), Expect = 2e-08
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-V 295
+ ++AP+ L +R +C+ GA++ M + K + + LV E L V
Sbjct: 291 KIMLAPLTTVGNLPFRRICKEFGADITCGEMALAPRLLKGVR-EEWALVKRHESEDLFGV 349
Query: 296 QFCGNNPEIMASAAKLA--EEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
Q GNNP ++ +L E D +D+N+GCP + + G + + +L+ +V +
Sbjct: 350 QIAGNNPGVLTRCCQLLNDETEVDFVDLNVGCPIDLVYKQGGGCGMLNRLNILESVVKSA 409
Query: 470 SKAVSIPITCKVRIFEDIDKSVNYAKMLEAS--GCKLLTVH 586
++ + IP T K R DK + + M + G ++ +H
Sbjct: 410 TEVLDIPFTVKTRTGVYADKPIAHKLMSKFKDWGASMINIH 450
>UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;
n=10; Rhodobacterales|Rep: TRNA-dihydrouridine synthase,
putative - Silicibacter pomeroyi
Length = 327
Score = 61.3 bits (142), Expect = 2e-08
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
P ++APM ++ +R L GA + + M+ S + ++ + V
Sbjct: 12 PPVILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENTAV 71
Query: 296 QFCGNNPEIMASAAK-LAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q G + +A AA+ +A+ IDIN+GCP G GS L + ++ A+
Sbjct: 72 QLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVV 131
Query: 473 KAVSIPITCKVRIFED--IDKSVNYAKMLEASGCKLLTVH 586
AV +P+T K R+ D + + + A+ +G +++T+H
Sbjct: 132 AAVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIH 171
>UniRef50_Q013U5 Cluster: CG3645-PB, isoform B; n=1; Ostreococcus
tauri|Rep: CG3645-PB, isoform B - Ostreococcus tauri
Length = 110
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVF 229
EL +P++ VAPMVD SELA+R LC+R+GA L YTPM+H+ +F
Sbjct: 60 ELGSPRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLF 101
>UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein yohI - Protochlamydia
amoebophila (strain UWE25)
Length = 326
Score = 60.5 bits (140), Expect = 3e-08
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEI 457
P Q G++PE+MA A+ E ID+N GCP ++ RG S L++ L K +
Sbjct: 69 PQAAQLMGSDPELMAEMARAVERRGAQRIDLNCGCPSNTVTGRGAGSSLLKEPDHLYK-V 127
Query: 458 VTAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+M +AV++P+T K+R F D + +ASG K LT+H
Sbjct: 128 AKSMVEAVNVPVTAKLRSGFTDTSLFHDNLLAAQASGIKYLTLH 171
>UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Marinomonas sp. MWYL1
Length = 341
Score = 60.5 bits (140), Expect = 3e-08
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+F +APM+D + +R+ R N L YT M+ + + + + L E + P+ +
Sbjct: 19 RFSIAPMMDWTTSDYRVFARTLSKNTLLYTEMVTTGALLQ-GNHPERFLRYDECEHPIAL 77
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q G++ + AK+AE+ D +++N+GCP + G+ L + +KE + AM
Sbjct: 78 QLGGSDAVALGKCAKMAEQAGFDEVNLNVGCPSDRVQNSLIGACLMAHPDKVKEAMRAMQ 137
Query: 473 KAVSIPITCKVRIFEDIDKSVNYAKMLEASG 565
SIP+T K RI +D +Y+ + + G
Sbjct: 138 DNCSIPVTIKHRI--GLDDQEDYSVVRDFVG 166
>UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep:
CG10463-PA - Drosophila melanogaster (Fruit fly)
Length = 604
Score = 60.5 bits (140), Expect = 3e-08
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ V++P+ L +R +C+ GA++ M + K + + VQ
Sbjct: 258 KLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQ 317
Query: 299 FCGNNPEIMASAAKLAEE--YCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
CGNNP ++ AA++ E D ID+N+GCP + + GS L +L E+
Sbjct: 318 LCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNIL-ELTVRSC 376
Query: 473 KAVS--IPITCKVRIFEDIDKSVNY--AKMLEASGCKLLTVH 586
A+S +P T K+R DKSV + ++E G +T+H
Sbjct: 377 AALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLH 418
>UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;
Bdellovibrio bacteriovorus|Rep: Nitrogen regulation
protein nifR3 - Bdellovibrio bacteriovorus
Length = 352
Score = 59.3 bits (137), Expect = 7e-08
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYT----PMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+APMV + +A R + R + YT ML+S + + + + L+
Sbjct: 20 LAPMVGLTHVALREVMRDYLPAEAYTIWPTEMLNSRRIPGENLEKTPETMRAAYEPGLVP 79
Query: 296 QFCGNNPEIMASAAK-LAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q GN + +A + K L E +AIDIN+GCP A + YG L D E+V
Sbjct: 80 QILGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGDPAYAAEVVRMTV 139
Query: 473 KAVSIPITCKVRIF---EDIDKSVNYAKMLEASGCKLLTVH 586
K ++P++ K+R ++ D+ + + L SG + +H
Sbjct: 140 KNSTVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLH 180
>UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 671
Score = 58.4 bits (135), Expect = 1e-07
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 4/160 (2%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
Q ++AP+ L +R +C+R GA++ M + + K L + VQ
Sbjct: 325 QLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCEDKFGVQ 384
Query: 299 FCGNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
CG+ + A+ E DA +DIN GCP + G+ L + + +++++ +S
Sbjct: 385 ICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQLLRGIS 444
Query: 473 KAVSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
++S P T K+RI ED + L G +T+H
Sbjct: 445 SSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLH 484
>UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4;
Bifidobacterium|Rep: Possible NifR3-like protein -
Bifidobacterium longum
Length = 414
Score = 57.6 bits (133), Expect = 2e-07
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPML---HSNVFTKDAKYRKDNLVTCEEDRPLIV 295
V++PM + +R++C +G + Y + + V R + E+ R L
Sbjct: 50 VLSPMAGVTNWPFRVICEEYGPDGLYVAEMITARALVAHNPKALRLCHFAKSEKIRSL-- 107
Query: 296 QFCGNNPEIMASAAKLAEE--YCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEI---V 460
Q G NP I AAK+ + D +D+N GCP R GS L ++ E+ V
Sbjct: 108 QLYGVNPSITEQAAKIVVDGNMADHVDLNFGCPVPKVTRRGGGSALPWKTDIFTELLQRV 167
Query: 461 TAMSKAVSIPITCKVRIFEDIDKS--VNYAKMLEASGCKLLTVH 586
A+ + IP+T K+R+ D + + + + GCK +T+H
Sbjct: 168 VAVCEPAGIPVTAKIRVGIDHNHETFLEAGHIAQEEGCKAVTLH 211
>UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 343
Score = 57.6 bits (133), Expect = 2e-07
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Frame = +2
Query: 86 MANWIFELNNPQF-----VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYR 250
M NW ++ P + ++AP+ ++L +R R G +T M+ T +
Sbjct: 1 MRNWKICVDMPLYPENALLMAPLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERS 60
Query: 251 KDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCP-QSIAKRGRYGSF 424
L E+ L VQ G + E + AA + EY +D NLGCP +AK+G G+
Sbjct: 61 AGMLRRGPEEEFLGVQLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGA-GAE 119
Query: 425 LQDDWELLKEIVTAMSKAVSIPITCKVRIF--EDIDKSVNYAKMLEASGCKLLTVH 586
L + +++ P+T K+RI ED ++ AK L G + +TVH
Sbjct: 120 LGRHLDAALACFAIIAERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVH 175
>UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2;
unclassified Gammaproteobacteria|Rep:
TRNA-dihydrouridine synthase C - Congregibacter
litoralis KT71
Length = 328
Score = 57.6 bits (133), Expect = 2e-07
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWR-LLCRRHGANLCYTP-------MLHSNVFTKDAKYRKDNLVT 268
NP+ ++APM + R LL + G + C T +L VF + + T
Sbjct: 6 NPRILLAPMEGVIDHTMRDLLTQLGGVDRCVTEFVRVSQELLPPRVFHRLCPELANGGCT 65
Query: 269 CEEDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWEL 445
P+ +Q G +P ++A +A++ AE +D+N GCP R GS + + E
Sbjct: 66 -SSGVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPER 124
Query: 446 LKEIVTAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ IV A +A+ S+P++ K+R+ F+ D+ ++ ++A+ L +H
Sbjct: 125 VHRIVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIH 174
>UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2;
n=10; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
2 - Bacillus subtilis
Length = 325
Score = 57.6 bits (133), Expect = 2e-07
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = +2
Query: 92 NWIFELNNPQFVVAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTK-DAKYR-KDNL 262
N+ EL P FV+APM D +++ +R + G ++ +T +S + D K + L
Sbjct: 4 NFWRELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRL 63
Query: 263 VTCEEDRPLIVQFCGNNPE-IMASAAKLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDD 436
E+++P++ G+ PE + +AE +DIN+GCP ++A G+ GS L
Sbjct: 64 TFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGK-GSGLICR 122
Query: 437 WELLKEIVTAMSKAVSIPITCKVRI-FEDIDK 529
+ E++ A +KA +P++ K R+ + D+D+
Sbjct: 123 PAVAAELIQA-AKAGGLPVSVKTRLGYTDVDE 153
>UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4;
Thermotogaceae|Rep: Dihydrouridine synthase DuS -
Fervidobacterium nodosum Rt17-B1
Length = 322
Score = 57.2 bits (132), Expect = 3e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+APM ++ +R LC +HGA +T M+ + + K + +E + VQ G
Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRVGVQLFG 72
Query: 308 NNPEIMASAAKLAEEYCDAIDINLGCPQS-IAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
++ ++ AA + +E +D+N GCP S + K+G GS L D +++V AM ++V
Sbjct: 73 SDYAELSEAAAIVQEKGLWVDLNAGCPVSKVIKKGA-GSALLKDLGEFRKVVRAM-RSVL 130
Query: 485 IPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
T K RI + D+ +L + VH
Sbjct: 131 KRFTVKTRIGWEKDEFEKIYNILLEENVDAVFVH 164
>UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Dihydrouridine
synthase family protein - Plesiocystis pacifica SIR-1
Length = 321
Score = 57.2 bits (132), Expect = 3e-07
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ VQ G P MA AA+ A ID+N GCP G+ L D ++ +
Sbjct: 61 PVFVQLLGGEPHWMARAAETAVALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVT 120
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
A+ AV +P+T K+R+ +ED V A+ EA G LT+H
Sbjct: 121 RAVRAAVPAELPVTVKIRVGWEDPSPVVEIARAAEAGGASWLTIH 165
>UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
TRNA-dihydrouridine synthase A - Buchnera aphidicola
subsp. Cinara cedri
Length = 348
Score = 56.8 bits (131), Expect = 4e-07
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRR-HGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIV 295
+F VAPM ++ R+ YT M+ K K + +++ P+ +
Sbjct: 30 KFSVAPMFKYTDQHCLYFYRQLTKKTFLYTEMITIQKMLFSKKLFKKKQI--KKNNPIAI 87
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
Q GNNP ++ AK A I++N+GCP AK G +G +L ++ L+ ++ A+
Sbjct: 88 QLAGNNPLFLSLCAKKAYFLGFKEINLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAIY 147
Query: 473 KAVSIPITCKVRIFEDIDKSVNYAK 547
V I I+ K+R+ + +K+ + K
Sbjct: 148 LTVPIQISIKIRLGTNENKNYRFLK 172
>UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2;
Proteobacteria|Rep: TRNA-dihydrouridine synthase -
Ralstonia solanacearum UW551
Length = 369
Score = 56.8 bits (131), Expect = 4e-07
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+++Q G++P +A +AA+ A ID+N GCP + R G+ L ELL IV
Sbjct: 108 PMVIQLLGSDPVWLARNAAQAATISPHGIDLNFGCPAKVVNRHGGGAMLLSTPELLHTIV 167
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+A+ AV +I +T K+R+ D +++ A L G L VH
Sbjct: 168 SAVRAAVPANIAVTAKMRLGVSDTSLAIDCATALAEGGAASLVVH 212
>UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 344
Score = 56.4 bits (130), Expect = 5e-07
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ Q G++P MA +AA+LA ID+N GCP ++ R G+ L + E L IV
Sbjct: 70 PVRAQLLGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAIV 129
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+A+ +AV +P++ K+R+ + D ++V A + G L VH
Sbjct: 130 SAVRRAVPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVH 174
>UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4;
Moraxellaceae|Rep: TIM-barrel protein, yjbN family -
Psychrobacter sp. PRwf-1
Length = 348
Score = 56.4 bits (130), Expect = 5e-07
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
++N + VAPM+D + +R R + YT M+ ++ + R T E
Sbjct: 18 MHNKRLSVAPMIDWTTTDYRFFARLFNPHTYLYTEMISTSAILQGKTDRLLRYDTLEH-- 75
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
PL++Q G + M A A++ + ++IN+GCP + + G+ L + + + +V
Sbjct: 76 PLVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNKIGACLMAEPDTVAALV 135
Query: 461 TAMSKAVSIPITCKVRIFEDIDKSVNYAK-MLEAS---GCKLLTVH 586
M V IP+T K RI D S + + + AS GC+ VH
Sbjct: 136 RNMQAHVDIPVTVKHRIGIDEHDSYEFMQDFVSASAEAGCQRFIVH 181
>UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 407
Score = 56.4 bits (130), Expect = 5e-07
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
LI QF N + +A AA+L Y D ID+N GCPQ A G L EL++++V
Sbjct: 152 LIAQFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMVRG 211
Query: 467 MSKAV--SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+ + P++ K+RI + +K+ +G LT+H
Sbjct: 212 VKDRMGWGWPVSIKIRIDSEQEKTEQLISNALQAGISHLTIH 253
>UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 766
Score = 56.4 bits (130), Expect = 5e-07
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHS----------NVFTKDAKYRKDN--LVTC 271
+APMV L RLL +GA+L + P + N T +Y KD+ + +C
Sbjct: 80 LAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVNPHTGVVEYLKDHKQIFSC 139
Query: 272 EE-DRPLIVQFCGN-NPEIMASAAKLAEEYCD--AIDINLGCPQSIAKRGRYGSFLQDDW 439
+RP +V G+ +P + A K + D A+D+N GCP+ + G+ +
Sbjct: 140 HPIERPYLVYQLGSADPHLAFQAIKTITQADDVAAVDLNCGCPKPFSTHAGMGANMLSTP 199
Query: 440 ELLKEIVTAMSKA--VSIPITCKVRIFEDIDKSVNYA-KMLEASGCKLLTVH 586
LL + AM +A + +TCK+R+ +K++ K++ + LTVH
Sbjct: 200 ILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEKTLELVDKIVRTGAIECLTVH 251
>UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 384
Score = 56.4 bits (130), Expect = 5e-07
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE-------E 277
+ V+APMV A EL RL+ HGA+L ++P + + + L T + +
Sbjct: 7 KLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPSKVQ 66
Query: 278 DRP---------------LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGR 412
RP LI Q +P + AA IDIN GCP+ +
Sbjct: 67 TRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSG 126
Query: 413 YGSFLQDDWE----LLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLT 580
GS L + +LKE+V + S PI+ K+R+ + ++ K L A+G LT
Sbjct: 127 MGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLT 186
Query: 581 VH 586
VH
Sbjct: 187 VH 188
>UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 326
Score = 56.0 bits (129), Expect = 6e-07
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+++Q G++PE +A +AA+ A ID+N GCP + R G+ L ELL IV
Sbjct: 65 PMVIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPELLHRIV 124
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ + AV I +T K+R+ D ++ A L G L VH
Sbjct: 125 STVRAAVPARIAVTAKMRLGVSDTSLAIACATALAEGGAASLVVH 169
>UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain
containing protein; n=1; Babesia bovis|Rep:
Dihydrouridine synthase (Dus) domain containing protein
- Babesia bovis
Length = 362
Score = 55.6 bits (128), Expect = 8e-07
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Frame = +2
Query: 110 NNPQFVVAPMVDASELAWRLLCR--RHGANLCYTPMLHSNVFTKDAKYRKDNLVTCE-ED 280
+ P +APM+D + +R R A L M ++ D+ + +++ C+ +
Sbjct: 14 DRPLVQIAPMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSD-KVGSMLHCDANE 72
Query: 281 RPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQS-IAKRGRYGSFLQDDWELLKE 454
P+++Q GNN + ++ A +A Y ++N+GCP + ++ +G +G+ L +D L+
Sbjct: 73 HPIVLQLGGNNLDSLSKAGNIALGYGYTEFNLNVGCPSTRVSGKGCFGAALMNDAPLVGR 132
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSVNYAK----MLEASGCKLLTVH 586
IV + + P+T K R+ D + S + + + GC VH
Sbjct: 133 IVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQGCTDFIVH 180
>UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 477
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA 466
L+ QF + PE A A++L + D +D+N GCPQ A GS+L E ++++V A
Sbjct: 169 LVAQFASSKPEPFADASELIGRFVDGVDLNCGCPQPWAYEELLGSYLLRQPETVRDMVRA 228
Query: 467 MSKAVSIPITCKVRIFEDIDKSVNYAKMLEA--SGCKLLTVH 586
+ + V+I D D + A + A +G +L +H
Sbjct: 229 VKARMGSDFCVSVKIRIDPDLRLTDALVRNALHAGASILQIH 270
Score = 34.3 bits (75), Expect = 2.1
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
V APMV S+LA+R L R+ ++ TPM+ + F++ R T + +R
Sbjct: 43 VCAPMVRYSKLAFRTLVSRYETHITTTPMILAKEFSRTEAARNSEFSTNQYER 95
>UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;
n=1; Bdellovibrio bacteriovorus|Rep: Dihydrouridine
synthase family protein - Bdellovibrio bacteriovorus
Length = 323
Score = 54.8 bits (126), Expect = 1e-06
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Frame = +2
Query: 128 VAPMVDASELAWR-LLCRRHGANLCYTPMLH-------SNVFTKDAKYRKDNLVTCEEDR 283
+APM + R L R G + C T L +VF K+ K T
Sbjct: 5 LAPMEGVVDWVMRDTLTRLGGIDQCVTEFLRVTDRLHPESVFYKNCPELKTGSRT-RWGT 63
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ VQ G E +A A+ A + +D+N GCP R G+ L + + IV
Sbjct: 64 PVFVQLLGGQAEPLALNAQRAVKLGALGVDLNFGCPAKTVNRHDGGASLLKSCDRVFNIV 123
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ KAV +P+T K+R+ F+D K + A+ +E + LTVH
Sbjct: 124 DTVRKAVPADVPVTAKIRLGFDDPTKCLEIAQAVEEANATWLTVH 168
>UniRef50_Q9LY64 Cluster: Putative uncharacterized protein
MAA21_140; n=4; Arabidopsis thaliana|Rep: Putative
uncharacterized protein MAA21_140 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 456
Score = 54.8 bits (126), Expect = 1e-06
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P F VAPM+D ++ +R L R + YT M+ + L + P++
Sbjct: 37 PSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIV 96
Query: 293 VQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQ-SIAKRGRYG 418
+Q G+N E +A AAKL++ Y D I++N GCP +A G +G
Sbjct: 97 LQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFG 140
>UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Opitutaceae bacterium TAV2|Rep: Putative TIM-barrel
protein, nifR3 family - Opitutaceae bacterium TAV2
Length = 389
Score = 54.0 bits (124), Expect = 2e-06
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++P+ + L RL R G T ++++ + +K + T D+PL +Q
Sbjct: 14 LSPLAGYTNLPMRLTVRELGGLGWATTDLVNARSLIERSKGAMKLVETAPGDQPLAIQLF 73
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G+ PE M AA + +E ++D+N+GCP G+ + + +V M +AV
Sbjct: 74 GSVPEEMRDAAVICKELGAQSVDVNMGCPVKKVVGIGGGAAMMTELNKTAALVRGMVEAV 133
Query: 482 --SIPITCKVRI-FEDID-KSVNYAKMLEASGCKLLTVH 586
IP+T K+R+ ++D + + + A++L G + VH
Sbjct: 134 GNKIPVTAKMRLGWDDANITAPDLARVLADVGVAAIFVH 172
>UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase,
putative; n=3; Borrelia burgdorferi group|Rep: Histidine
phosphokinase/phophatase, putative - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 335
Score = 53.6 bits (123), Expect = 3e-06
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Frame = +2
Query: 77 NYIMANWIFELNNPQFVVAPMVDASELAWRLLCRRHGA-----NLCYTPMLHSNVFTKDA 241
+Y M ++F++ P ++APM D ++ +R L G+ ++ +T + + +
Sbjct: 4 SYFM-KFLFDIPLPIMILAPMEDVTDTVFRNLIHLIGSAEGEPHIYFTEFISTKGILNGS 62
Query: 242 KYRKDN--LVTCEEDRPLIVQFCGNNPEIMASAAK-LAEEYCDAIDINLGCPQS-IAKRG 409
K + L E +RPLI Q GN PE A + L IDIN+GCP+S I K+G
Sbjct: 63 KQSVQHVFLKPNELNRPLIAQIWGNVPEQFYRAIEILGSMGFWGIDINMGCPKSKIIKKG 122
Query: 410 RYGSFLQDDWELLKEIVTAMSKA---VSIPITCKVR 508
S L ++ L KEI+ A +A ++P++ K R
Sbjct: 123 -VCSALINNKSLAKEIILASKEACARFNLPLSVKTR 157
>UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory
protein-3 homologue; n=3; Entamoeba histolytica|Rep:
Putative nitrogen fixation regulatory protein-3
homologue - Entamoeba histolytica
Length = 165
Score = 53.6 bits (123), Expect = 3e-06
Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Frame = +2
Query: 245 YRKDNLVTC--EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYG 418
++ D ++T E+ I+Q + E L +E C IDINLGC + +G G
Sbjct: 36 HKNDVMLTLKPEQQSKTILQLGTFDVESSVKCVSLIQEVC-GIDINLGCGMWFSTKGEMG 94
Query: 419 SFLQDDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
L D+ + L++IV A+ +S PI+ K+R+ + ++++ + + L + G ++++H
Sbjct: 95 QALVDNRDKLEKIVKAL-VGLSKPISAKIRLQQTHEETLEFIQWLYSLGISIISLH 149
>UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 461
Score = 53.6 bits (123), Expect = 3e-06
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
E L+ Q +P++ AAK+ ID+N GCP+ + G G+ L + L
Sbjct: 84 ESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVNAGCPKPFSTTGGMGAALLQTPDRLVS 143
Query: 455 IVTAMSKAVSIP----ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
I+TA+ + V P I+ K+R+ D +++ + L A+G LTVH
Sbjct: 144 ILTALVQQVGTPYQIGISVKIRLLADPERTRDLVTRLCATGITGLTVH 191
Score = 32.7 bits (71), Expect = 6.5
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 113 NPQFVVAPMVDASELAWRLLCRRHGANLCYTP 208
N Q V+APMV + EL RLL ++GA+L + P
Sbjct: 2 NHQRVLAPMVRSGELPSRLLALKYGADLVWGP 33
>UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4;
Neisseria|Rep: tRNA-dihydrouridine synthase C -
Neisseria meningitidis serogroup A
Length = 333
Score = 53.6 bits (123), Expect = 3e-06
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P VQ G++ + MA+ A A + D ID+N GCP R + G+ L + EL+ IV
Sbjct: 76 PCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPELIFHIV 135
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ + + IP+T K+R+ +ED ++ A + G LTVH
Sbjct: 136 KTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVH 180
>UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 660
Score = 53.2 bits (122), Expect = 4e-06
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+AP+ L +R +C+R GA++ C + +N+ A ED VQ
Sbjct: 319 LAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQASEWALLKRHASEDL-FGVQLE 377
Query: 305 GNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G P+ M A+L + D +DIN GCP + + G L ++IV M+
Sbjct: 378 GCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQIVRGMNSV 437
Query: 479 VSIPITCKVRIFEDIDKSVNYAKMLEAS--GCKLLTVH 586
+ +P+T K+R + ++ + + E G L+T+H
Sbjct: 438 LDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLH 475
>UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel
protein; n=5; Alphaproteobacteria|Rep: Dihydrouridine
synthase TIM-barrel protein - Parvularcula bermudensis
HTCC2503
Length = 368
Score = 53.2 bits (122), Expect = 4e-06
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
++APM ++L +R R GA L + M+ S + ++ D ++Q
Sbjct: 31 ILAPMSGITDLPFRRAALRAGAPLVVSEMVASEEWVRERPDVALRAALPTGDSLNVIQLA 90
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G M A AE D IDIN+GCP GS L D + ++ A
Sbjct: 91 GREARWMREGAAKAEALGADIIDINMGCPARKVTGLLSGSALMRDVDHALSLIKATLSGT 150
Query: 482 SIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
S P+T K+R+ D + AK +G ++TVH
Sbjct: 151 SRPVTLKMRLGWDHGHLNAPEIAKGAADAGVAVITVH 187
>UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12;
Pezizomycotina|Rep: Contig An02c0390, complete genome -
Aspergillus niger
Length = 446
Score = 53.2 bits (122), Expect = 4e-06
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
E LI Q PEI AAKL ID+N GCP+ + G G+ L + L
Sbjct: 101 EKGKLIYQIGTATPEIAVQAAKLVAGDVAGIDVNSGCPKPFSTSGGMGAALLKTPDKLVA 160
Query: 455 IVTAMSKAVSIP----ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
I+ A+ K V P I+ K+RI +D +++ L +G LTVH
Sbjct: 161 ILEALVKEVGTPFQIGISVKIRILKDPEETRALVSRLVKTGITGLTVH 208
>UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=12;
Eutheria|Rep: tRNA-dihydrouridine synthase 3-like - Homo
sapiens (Human)
Length = 650
Score = 53.2 bits (122), Expect = 4e-06
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKD-AKYRKDNLVTCEEDRPLIVQF 301
+AP+ L +R +C+R GA++ C + +N+ +++ CE+ VQ
Sbjct: 309 LAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDI--FGVQL 366
Query: 302 CGNNPEIMASAAKLAEEYC--DAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G P+ M A+L D +DIN+GCP + + G L + ++IV M++
Sbjct: 367 EGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQ 426
Query: 476 AVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
+ +P+T K+R + E ++ + L G L+T+H
Sbjct: 427 VLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLH 465
>UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO2497;
n=5; Bacteria|Rep: Putative uncharacterized protein
SCO2497 - Streptomyces coelicolor
Length = 406
Score = 52.8 bits (121), Expect = 6e-06
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRH--GANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPL 289
P V+APM + +R LCR G L + M+ + + + + + P
Sbjct: 25 PPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATETPR 84
Query: 290 IVQFCGNNPEIMASAAKL-AEE-YCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV- 460
+Q G +P + A ++ AEE D ID+N GCP R GS L LL+ IV
Sbjct: 85 SIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIVR 144
Query: 461 TAMSKAVSIPITCKVR 508
A++ A +P+T K+R
Sbjct: 145 EAVTGAGDLPVTMKMR 160
>UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1;
Marinomonas sp. MWYL1|Rep: Dihydrouridine synthase DuS -
Marinomonas sp. MWYL1
Length = 335
Score = 52.8 bits (121), Expect = 6e-06
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +2
Query: 257 NLVTCEEDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQD 433
N + P+ Q G+N E+MA SA + ID+N GCP GS L
Sbjct: 73 NKARTTHNHPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQ 132
Query: 434 DWELLKEIVTAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ L +I++A+ + IP++ K+R+ FED + +EA+G LT+H
Sbjct: 133 TPDALYDIMSAIRDTLPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIH 186
>UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domains
plus Dus1p tRNA dihydrouridine synthase Tim barrel; n=2;
Cryptosporidium|Rep: Ylr401cp-like protein with 2 CCCH
domains plus Dus1p tRNA dihydrouridine synthase Tim
barrel - Cryptosporidium parvum Iowa II
Length = 707
Score = 52.8 bits (121), Expect = 6e-06
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQ 298
+ ++AP+ L +R LC + GA++ + M+ N L E++ +Q
Sbjct: 317 KLILAPLTTVGNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKYFGIQ 376
Query: 299 FCGNNPEIMASAAKLAEEYC--DAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAM 469
G N + + E+C D IDIN CP +S+ +G GS L D L+ +V +
Sbjct: 377 LAGGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGA-GSILVDRVSELETMVKGL 435
Query: 470 SKAVSIP-ITCKVRI 511
K + +T KVR+
Sbjct: 436 KKVMDGKLVTVKVRM 450
>UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 608
Score = 51.6 bits (118), Expect = 1e-05
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+AP+ L +R +C+ GA++ M + L + + VQ CG
Sbjct: 251 LAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRRHKSEDIFGVQICG 310
Query: 308 NNPEIMASAAKLAEEYCDA--IDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
P+ + +L E+ D IDIN+GCP S+ ++G YGS + + + ++ ++ A S A
Sbjct: 311 GYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKG-YGSMMLEKPKKMETVIRAASAA 369
Query: 479 V-SIPITCKVRI-FEDIDKSVN-YAKMLEASGCKLLTVH 586
+ +T K R+ + D + + +A + G +T+H
Sbjct: 370 LGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLH 408
>UniRef50_Q012U0 Cluster: Nitrogen regulation family protein; n=2;
Ostreococcus|Rep: Nitrogen regulation family protein -
Ostreococcus tauri
Length = 490
Score = 51.2 bits (117), Expect = 2e-05
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDA--KYRKDNLVTCE-EDRPLIV 295
VAPM++ + +R++CR A +T M T R D + E ++
Sbjct: 104 VAPMMEYTTAHFRVMCRLMSAKTWLWTEMEVDQTLTHAVLEGTRVDRFLDYPVETAATVL 163
Query: 296 QFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQ-SIAKRGRYGSFLQDDWELLKEIVTAM 469
Q G++PEI+ A +A Y + I++N GCP +A +G +G+ L + L+ E + AM
Sbjct: 164 QLGGSDPEILGRATAIAAPYGYEEINLNSGCPSPKVAGKGCFGAALMTEPRLVAECLQAM 223
Query: 470 SKAV--SIPITCKVRIFEDIDKSVNYAKMLE 556
++ P++ K RI +D+ +Y + E
Sbjct: 224 NENAPSGTPVSIKCRI--GVDECDSYDALCE 252
>UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 595
Score = 51.2 bits (117), Expect = 2e-05
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 8/164 (4%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKD-NLVTCEEDRPLI- 292
+ V+AP+ L +R +C+ GA++ + M + VF + + + +L+ E +
Sbjct: 236 KLVLAPLTTVGNLPFRRICKSFGADVTLSEM--AVVFNLNRLQKSEWSLLRRHESEDIFG 293
Query: 293 VQFCGNNPEIMASAAKLAEEY---CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIV 460
+Q + P+ A+ A+ E D +DIN GCP + I K G G L E L+++V
Sbjct: 294 IQLAVSRPQEAATFAQALEASGFSYDFLDINCGCPVEKIVKSG-CGCGLWQRTERLRDVV 352
Query: 461 TAMSKAVSIP--ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+++ S P I C++ + EDI A G +TVH
Sbjct: 353 ESLAIYQSRPVAIKCRIGLDEDIPTLHQQIHRYSAWGAAAVTVH 396
>UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein
NCU03195.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU03195.1 - Neurospora crassa
Length = 341
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P +VQF N+P+ +A A+ L Y +D+N GCPQS A G+ L + EL++++V
Sbjct: 33 PTVVQFGANDPQELARASTLVAPYAGGVDLNCGCPQSWACAETLGAALMEKRELVRDMV 91
>UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 321
Score = 50.8 bits (116), Expect = 2e-05
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGA-NLCYTPMLH-SNVFTKDAKYRK-----DNLVTCEE 277
Q +APM ++ R L R G + C T L + + +R+ D+
Sbjct: 2 QLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTPA 61
Query: 278 DRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
P+ +Q G++P MA +A + AE ++IN GCP G++L + +
Sbjct: 62 GTPVHLQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIHT 121
Query: 455 IVTAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
I+ ++ KA+ +P+T K+R+ F+D ++ A+ +E++G + + +H
Sbjct: 122 ILESVRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIH 168
>UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Dihydrouridine
synthase family protein - Lentisphaera araneosa HTCC2155
Length = 334
Score = 50.8 bits (116), Expect = 2e-05
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Frame = +2
Query: 86 MANWIFELNNPQFVVAPMVDASELAWR--LLCRRHGANL-------------CYTPMLHS 220
M N+ ++ +P +APM D ++ +R LL NL C+ P+ H
Sbjct: 1 MNNFWTDIKSPGIALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCH-PIGHD 59
Query: 221 NVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMASA-AKLAE-EYCDAIDINLGCP-Q 391
V + ++ + E++ ++ Q G NP+ + A +K + E D +DIN+GCP
Sbjct: 60 KVIHRFLISDEERKLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVA 119
Query: 392 SIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVR 508
I K+G + + E+ KE+V A A +P++ K R
Sbjct: 120 KIVKQGGCSALINTP-EIAKELVLAAKAATKLPVSVKTR 157
>UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;
n=2; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 725
Score = 50.8 bits (116), Expect = 2e-05
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+AP+ L +R LC +GA + + M + AK + E ++ VQ G
Sbjct: 362 LAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAG 421
Query: 308 NNPEIMASAAKLAEEYC------DAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
P M AA++ D +D+N+GCP + GS L D L +++ M
Sbjct: 422 GFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGM 481
Query: 470 SKAV-SIPITCKVR 508
++A+ IP+T K R
Sbjct: 482 NRALGDIPLTVKFR 495
>UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1;
Propionibacterium acnes|Rep: TIM-barrel enzyme, NifR3
family - Propionibacterium acnes
Length = 411
Score = 50.4 bits (115), Expect = 3e-05
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSN--VFTKDAKYRKDNLVTCEEDRPLIVQ 298
V+APM + A+R LC GA L M+ S V+ + CE+ R VQ
Sbjct: 53 VLAPMAGVTNAAFRQLCAEQGAGLYVCEMITSRGLVYGDHKTHGMLAFAECEDVRS--VQ 110
Query: 299 FCGNNPEIMASAAK-LAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTA-- 466
G +P ++ A L E+Y + +D+N GCP R G L + +V+A
Sbjct: 111 LYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKLDRFAAVVSAAV 170
Query: 467 -MSKAVSIPITCKVRIFEDID--KSVNYAKMLEASGCKLLTVH 586
A +P+T K RI D + ++ A+ SG + +H
Sbjct: 171 QAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAAAVCLH 213
>UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7;
Desulfuromonadales|Rep: Dihydrouridine synthase, DuS -
Pelobacter propionicus (strain DSM 2379)
Length = 342
Score = 50.4 bits (115), Expect = 3e-05
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDA-IDINLGCPQSIAKRGRYGSFLQDDWELLK 451
+D PL+VQ G+ E + S ++ A++ A I++N+GCP G+ G + + L
Sbjct: 91 DDVPLVVQLIGHGREALVSGSQAAQDAGAAHINLNMGCPYGRMTSGQTGGGMLRSPQELS 150
Query: 452 EIVTAMSKAVSIPITCKVRIFEDIDKSV-NYAKMLEASGCKLLTVH 586
I+ A+ K + + K+R D + + + + EASG L +H
Sbjct: 151 SIIPALRKTIRGTFSIKLRSGYDNPRQIFDLLPLFEASGVDFLVLH 196
>UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Dihydrouridine
synthase, DuS - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 340
Score = 50.0 bits (114), Expect = 4e-05
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ +Q G++PE +A+ A A+ +D+N GCP R G+ L E + +V
Sbjct: 71 PVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVHTVV 130
Query: 461 TAMSKAVS---IPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
A+++A++ I +T K+R+ F+D ++ A+ E+ G L VH
Sbjct: 131 RAVAEALAPLGIAVTAKIRLGFDDKHVALACAEAAESGGAAHLVVH 176
>UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=7;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 3-like -
Mus musculus (Mouse)
Length = 637
Score = 50.0 bits (114), Expect = 4e-05
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKD-AKYRKDNLVTCEEDRPLIVQF 301
+AP+ L +R +C+R GA++ C + +N+ +++ CE+ VQ
Sbjct: 296 LAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCEDI--FGVQL 353
Query: 302 CGNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G P+ M A+L D +DIN+GCP + + G L + ++IV ++
Sbjct: 354 EGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNG 413
Query: 476 AVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
+ +P+T K+R + E + + L G L+T+H
Sbjct: 414 VLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLH 452
>UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 374
Score = 49.6 bits (113), Expect = 5e-05
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDN--LVTCEEDRPLIVQ 298
V A + S+L R++ RRH A+ ++ K K L +E+ P+ Q
Sbjct: 41 VQAALSGYSDLPMRVIARRHSASYTICEVMLDQFLLSLTKREKTRHFLDIADEEHPVGGQ 100
Query: 299 FCGNNPE-IMASAAKLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIVTAMS 472
G PE A A KL E D ID+N GCP + + R R G F + EI+
Sbjct: 101 LMGAEPEQFSAGALKLVEAGFDVIDVNFGCPVKKVLGRCR-GGFHLSQPAVAIEILRRTR 159
Query: 473 KAV--SIPITCKVR 508
V IP+T K+R
Sbjct: 160 DVVPDHIPVTVKMR 173
>UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2;
Endopterygota|Rep: ENSANGP00000016833 - Anopheles
gambiae str. PEST
Length = 594
Score = 49.6 bits (113), Expect = 5e-05
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQFC 304
++P+ L +R +C+ +G ++ M + A ++ L L VQ C
Sbjct: 249 LSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGA-IQEWALTKRHSSEDLFGVQLC 307
Query: 305 GNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G+NP+++ AA++ E D ID+N GCP + GS L +LK +V + S+
Sbjct: 308 GHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQNVLKVMVQSCSRL 367
Query: 479 VS---IPITCKVRIFEDIDKSVNYAKM--LEASGCKLLTVH 586
++ T K RI +K + + + E G L+T+H
Sbjct: 368 LADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIH 408
>UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1174
Score = 49.6 bits (113), Expect = 5e-05
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +2
Query: 380 GCPQSIAKRGR-YGSFLQ--DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKM 550
G P KR + +Q D W +E++ + K + +P+T K+RI + +K+++YAKM
Sbjct: 757 GTPSGAIKRNATFSPRIQFHDTWPS-QELINTLHKELDVPVTAKIRILDTREKTLDYAKM 815
Query: 551 LEASGCKLLTVH 586
+ ++G +LTVH
Sbjct: 816 VISAGASILTVH 827
>UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Strongylocentrotus
purpuratus
Length = 499
Score = 49.2 bits (112), Expect = 7e-05
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPML----------HSNVFTKDAKY-RKDNLV-- 265
++APMV L RLL +GA++ Y L H N Y KD++V
Sbjct: 43 ILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLGTVDYISKDDVVIF 102
Query: 266 -TC--EEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDD 436
TC E DR L+ Q + + AK+ E+ IDIN+GCP+ + +G G+ L
Sbjct: 103 RTCSKETDR-LVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGMGAALLQK 161
Query: 437 WELLKEIVTAMSKAV 481
+ +KEI + S+ +
Sbjct: 162 PDTIKEIPSGGSQDI 176
>UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 287
Score = 49.2 bits (112), Expect = 7e-05
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRH-GANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP--L 289
Q +AP+ +R LC GA + + M + K A+ + + E D
Sbjct: 3 QLWLAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGDCF 62
Query: 290 IVQFCGNNPEIMASAAKLAE-EY-CDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIV 460
Q N E +AA +A E+ D +D+N GCP KRG G+ L L+ +V
Sbjct: 63 GAQIATNAIEEGVNAALIASGEFGADFVDLNCGCPIHETWKRG-LGAALLKKPAKLERLV 121
Query: 461 TAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
++ + +P+T K+R+ + ++ A+ LE +G + VH
Sbjct: 122 EGIASRIDVPLTVKIRLGIDSSSQARRIAEGLENAGASAVVVH 164
>UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 513
Score = 49.2 bits (112), Expect = 7e-05
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
E + LI Q ++PE A++ ID+N GCP+ + G G+ L + L
Sbjct: 187 EGKKLIFQIGTSDPEKAVQCARMVAADVAGIDVNAGCPKPFSTSGGMGAALLQTPDKLCA 246
Query: 455 IVTAMSKAV----SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
I+ A+ K + I I+ K+R+ E +++ + L A+G LT+H
Sbjct: 247 ILEALVKEIVPEFEIGISVKIRLLETPERTEALVRKLCATGITGLTIH 294
>UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Dihydrouridine
synthase, DuS - Desulfuromonas acetoxidans DSM 684
Length = 320
Score = 48.8 bits (111), Expect = 9e-05
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDA-IDINLGCPQSIAKRGRYGSFLQDDWELLK 451
+D PL+VQ G+ E +A AA++ + A +++N+GCP G+ G + + E +
Sbjct: 67 DDVPLVVQLIGHRSESLAEAAQIVADLGGAHVNLNMGCPFGRTTTGKTGGAMLQEPEKIG 126
Query: 452 EIVTAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+ + A+ A ++ KVR ++D ++ + + E G + +H
Sbjct: 127 DCLRAIRAAFHGSVSVKVRAGYDDPEQIFDLLPVFEKYGVDFIVLH 172
>UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5;
Bacteria|Rep: Transcriptional regulator - Anabaena sp.
(strain PCC 7120)
Length = 349
Score = 48.4 bits (110), Expect = 1e-04
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Frame = +2
Query: 116 PQFVVAPMVDASELAWRLLCRRHGA-NLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI 292
P +APM D + L + + +G+ + +T N ++ + + + RP+
Sbjct: 25 PLTALAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGILSAITENDTGRPVF 84
Query: 293 VQFCGNN-PEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAM 469
Q G + P+++ +A +L +D+N+GCP R G L +++I+ +
Sbjct: 85 AQMIGESIPDLVRTAKELCGYNIAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEEL 144
Query: 470 SKAVS-IPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
+AV+ P+T K+R+ FE+ D ++ LL++H
Sbjct: 145 RQAVNDRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLH 185
>UniRef50_Q2NEG1 Cluster: PyrD; n=1; Methanosphaera stadtmanae DSM
3091|Rep: PyrD - Methanosphaera stadtmanae (strain DSM
3091)
Length = 306
Score = 48.4 bits (110), Expect = 1e-04
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +2
Query: 248 RKDNLVTCEEDR---PLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYG 418
+K+ L E R P+I G++ E+ + A ++Y DA ++N+ CP AK G +G
Sbjct: 79 KKEELKDLNEIRDKTPVIASIYGDSEEVFSDVANQTKDYVDAFELNVSCPH--AKCG-FG 135
Query: 419 SFLQDDWELLKEIVTAMSKAV-SIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTV 583
S + ++ EL +IV+++ + +PI V++ ++ AK E +G LT+
Sbjct: 136 SNIGENPELTHDIVSSVKDNIKDVPII--VKLTPNVTDITEIAKAAEDAGADALTL 189
>UniRef50_A6PMB8 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 304
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +2
Query: 272 EEDRPLIVQFCGNNPEIM-ASAAKLAEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWEL 445
E P+ VQ GN PE++ A+AA+ E I++N GCP + + G G L+D +
Sbjct: 60 ESGLPVTVQLMGNRPEVIAAAAARFMELGAAGINLNFGCPSRQVTSGGAGGGALRDLAGM 119
Query: 446 LKEIVTAMSKAVSIPITCKVRI-FEDIDKSVNYAKMLEASGC 568
+ + T + P++ K+R +E D+ L +GC
Sbjct: 120 VTTVETVKKAIPASPLSVKLRTGWESPDEMQRILPALAETGC 161
>UniRef50_A0Z3E6 Cluster: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding protein; n=5;
Bacteria|Rep: Dihydroorotate
dehydrogenase/oxidoreductase, FAD-binding protein -
marine gamma proteobacterium HTCC2080
Length = 551
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
EDR L+V G + E + AK+ E D ++NL CP + YG + D +++ E
Sbjct: 92 EDRFLLVSIFGGSVEEFVAVAKILEPVADGFELNLSCPHA----SGYGMAMGQDPKIVHE 147
Query: 455 IVTAMSKAVSIPITCKV 505
I+ A+ + VS P+ K+
Sbjct: 148 IIAAVKQVVSKPVIPKL 164
>UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase;
n=35; Actinobacteria (class)|Rep: Probable
tRNA-dihydrouridine synthase - Mycobacterium
tuberculosis
Length = 389
Score = 48.0 bits (109), Expect = 2e-04
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Frame = +2
Query: 104 ELNNPQFVVAPMVDASELAWRLLCRR-------HGANLCYTPMLHSNVFTKDAKYRKDNL 262
EL +P V+APM + +A+R LCR+ + L M+ + +
Sbjct: 19 ELASP-VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77
Query: 263 VTCEEDRPLIVQFCGNNPEIMASAAKL--AEEYCDAIDINLGCP-QSIAKRGRYGSFLQD 433
++ P +Q +P+ +AA++ E D ID+N GCP + KRG G+ L
Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGG-GAALPF 136
Query: 434 DWELLKEIVTAMSKA---VSIPITCKVRI-FEDIDKS-VNYAKMLEASGCKLLTVH 586
L +IV A +A IP+T K RI +D + ++ ++ EA G + +H
Sbjct: 137 KRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192
>UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5;
Alteromonadales|Rep: TRNA-dihydrouridine synthase C -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 326
Score = 47.6 bits (108), Expect = 2e-04
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Frame = +2
Query: 119 QFVVAPMVDASELAWR-LLCRRHGANLCYTPM-------LHSNVFTKDAKYRKDNLVTCE 274
+ V+APM + R LL G +LC T L VF + +N +T
Sbjct: 2 KLVLAPMEGVVDFKMRQLLTNVGGFDLCVTEFVRVVDACLPDKVFYRYCPELSNNGLT-S 60
Query: 275 EDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
P+ +Q G +A +A K ID+N GCP + + G+ L D E +
Sbjct: 61 AGTPVRIQLLGQVAGALAENAVKAISLGSHGIDLNFGCPAKTVNKSKGGAVLLKDPEHMY 120
Query: 452 EIVTAMSKAVSI--PITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
EI+ A+ AV ++ K+R+ F+D S + ++G + +H
Sbjct: 121 EIIKAVRDAVDSKHQVSAKIRLGFDDDSNSQEIVDAVVSAGASSIAIH 168
>UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 313
Score = 47.6 bits (108), Expect = 2e-04
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 167 LLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRP-LIVQFCGNNPEIMASAAKL 343
L+ + H + T HS T Y+ L T + +P IVQF N P +A A+ L
Sbjct: 4 LMDQVHKLPVTNTSQTHSPAATL---YKDFTLATTPQPQPPTIVQFGANVPVELARASSL 60
Query: 344 AEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
+ +D+N GCPQS A G+ L + EL++++V
Sbjct: 61 VAPFVAGVDLNCGCPQSWACAETLGAALMERRELVRDMV 99
>UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 411
Score = 47.2 bits (107), Expect = 3e-04
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Frame = +2
Query: 110 NNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPL 289
N P+ V P VDA A L T M+ S ++ + + + +R
Sbjct: 54 NEPRHVTIPRVDAP------------AGLYVTEMVTSRALVEENERTLEMVRPDPAERVR 101
Query: 290 IVQFCGNNPEIMASAAKLAEE--YCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKEIV 460
+Q G NP +MA AA + E D ID+N GCP + K+G G+ L +L ++V
Sbjct: 102 SLQLYGVNPAVMAKAATMLVERDLTDHIDLNFGCPVPKVTKKGG-GAALPWKRDLFSDLV 160
Query: 461 TAMSKAV---------SIPITCKVRIFEDIDKSVNYAKMLEAS--GCKLLTVH 586
A+ +A IP+T K+RI D + L A G LT+H
Sbjct: 161 GAVVRACDEAGERAGREIPVTVKIRIGIDSEHETATDAALNAQKLGAAALTLH 213
>UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein
Y37E11B.5; n=2; Caenorhabditis|Rep: Putative
uncharacterized protein Y37E11B.5 - Caenorhabditis
elegans
Length = 554
Score = 47.2 bits (107), Expect = 3e-04
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDA-KYRKDNLVTCEEDRPLIVQF 301
+AP+ L +R +C +GA++ C L +++ + A +Y CE + VQ
Sbjct: 208 LAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCE--KIFGVQL 265
Query: 302 CGNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
G + MA A+++ E D IDIN+GCP + + G L + L E++ A
Sbjct: 266 AGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVLAATKS 325
Query: 476 AVS--IPITCKVR--IFEDIDKSVNYAKMLE 556
+ P+T K+R + E + K+ Y + ++
Sbjct: 326 VLGGCCPLTVKIRTGMKEGVLKAPEYVEHMK 356
>UniRef50_Q5CG46 Cluster: Uncharacterized protein family UPF0034;
n=2; Cryptosporidium|Rep: Uncharacterized protein family
UPF0034 - Cryptosporidium hominis
Length = 531
Score = 47.2 bits (107), Expect = 3e-04
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFT---KDAKYRKD----NL 262
L++ VAPM+D + +R+LCR +T M+ + D RK +
Sbjct: 23 LSDSVISVAPMLDVTNSHFRMLCRIISKKTELWTEMVVDDTIIHCYNDENRRKILQDVHF 82
Query: 263 VTCEEDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQ-SIAKRGRYGSFL 427
+ + PL++Q GNNP+ M A ++A +Y ++N+GCP +A +G +G+ L
Sbjct: 83 KKNDIENPLVLQLGGNNPQKMEKAIEIAYKYGFQNFNLNVGCPSCKVASKGSFGASL 139
>UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;
Fusobacterium nucleatum|Rep: Nitrogen regulation protein
NIFR3 - Fusobacterium nucleatum subsp. nucleatum
Length = 307
Score = 46.4 bits (105), Expect = 5e-04
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCG 307
+AP+ ++ +R + +L +T M+ N + ++ E VQ G
Sbjct: 6 IAPIAGVTDYTFRGILEDFKPDLIFTEMVSVNALSVLNDKTISKILKLREGNA--VQIFG 63
Query: 308 NNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVS 484
+ E + ++ K E I++N GCP YG+ L + E +K+I++ + ++
Sbjct: 64 EDIEKIKASVKYIENLGVKHINLNCGCPMKKIVNCGYGAALVKEPEKIKKILSEIKSVLN 123
Query: 485 --IPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
++ K+RI +++ + + K+ E GC +TVH
Sbjct: 124 NDTKLSVKIRIGYKEPENYIQIGKIAEELGCDHITVH 160
>UniRef50_Q8SUY1 Cluster: Putative uncharacterized protein
ECU07_1170; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1170 - Encephalitozoon
cuniculi
Length = 357
Score = 46.4 bits (105), Expect = 5e-04
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGAN-LCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLIVQFC 304
+APM+D + +R R + +T M+ SN + + + +DR +VQ
Sbjct: 17 LAPMMDVTTAHFRRFIRLTSEKTVLFTEMIVSNTVIHVPRDKLRERLGEYDDRT-VVQIG 75
Query: 305 GNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAV 481
G++ M A ++ + ++N GCP S K+G +G+ L + EL+ EI+ +
Sbjct: 76 GSDATSMVEAVRILQGLGYRMFNLNCGCPSSRVKKGSFGAVLMLNRELVAEIINRVYGET 135
Query: 482 SIPITCKVRIFEDIDKSVNY 541
++ K+R D V++
Sbjct: 136 GAVLSLKIRTGVDEHDGVDF 155
>UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aedes
aegypti|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 578
Score = 46.0 bits (104), Expect = 7e-04
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQFC 304
++P+ L +R +C+ +G ++ M S V + ++ L L VQ C
Sbjct: 233 LSPLTTVGNLPFRRICKEYGVDITCGEMACS-VPIINGMMQEWALTKRHPSEDLFGVQIC 291
Query: 305 GNNPEIMASAAKLAEEYCDA--IDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G+N ++++ A ++ E+ D +D+NLGCP + GS L +L+ ++ + S+
Sbjct: 292 GHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILEVMIQSCSRI 351
Query: 479 VS---IPITCKVRIFEDIDKSVNY--AKMLEASGCKLLTVH 586
++ T K R+ +K V + E G L+T+H
Sbjct: 352 LADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIH 392
>UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 453
Score = 46.0 bits (104), Expect = 7e-04
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 287 LIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWE----LLKE 454
LI Q NP + AAK+ ID+N GCP+ + G G+ L + +L+
Sbjct: 106 LIFQLGTANPSLAVEAAKVVAADVSGIDVNSGCPKPFSTSGGMGAALLQTPDRLVSILEA 165
Query: 455 IVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
+V + K I I+ K+R+ + +++ + +G LTVH
Sbjct: 166 LVEEIGKPYEIGISVKIRLLAEPERTEALVTRVCRTGITGLTVH 209
>UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase C
- Haemophilus ducreyi
Length = 325
Score = 46.0 bits (104), Expect = 7e-04
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +2
Query: 284 PLIVQFCGNNPEIMASAAKLAEEYCD-AIDINLGCPQSIAKRGRYGSFLQDDWELLKEIV 460
P+ VQ G P+ +A A+LA E ID N GCP G+ L D EL+
Sbjct: 69 PIRVQLLGQYPQWLAENAQLAIELGSYGIDFNCGCPSKTVNGSHGGAALLKDPELIYCAT 128
Query: 461 TAMSKAV--SIPITCKVRI-FEDIDKSVNYAKMLEASGCKLLTVH 586
A+ +AV + P++ K+R+ ++ + A ++ +G +TVH
Sbjct: 129 KAIREAVPKAQPVSVKMRLGWDCASQCFEIADAIQQAGADEITVH 173
>UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225;
n=3; Borrelia burgdorferi group|Rep: Putative
uncharacterized protein BB0225 - Borrelia burgdorferi
(Lyme disease spirochete)
Length = 335
Score = 45.6 bits (103), Expect = 9e-04
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Frame = +2
Query: 107 LNNPQFVVAPMVDASELAWRLLCRRHGANLC-YTPMLHS-NVFTKDAK-YRKDNLVTCEE 277
L N + +APMV+ ++ +R L R + YTPM+ + ++ D K K N +
Sbjct: 2 LMNRKISIAPMVNITDEHFRYLIRLLSKKVTLYTPMISAKSIIMGDVKKIVKQNPL---- 57
Query: 278 DRPLIVQFCGNNPEIMASAAKLAEEYC--DAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
+ P+ +Q N+ A ++ E++ D ++N+GCP + G+ L + +
Sbjct: 58 ESPIAIQIATNSKNDALKAIQILEKHFNFDEYNLNVGCPSLKIQNANCGACLMGNANQVG 117
Query: 452 EIVTAMSKAVSIPITCKVRI 511
EI+ M + + PI+ K R+
Sbjct: 118 EILKTMKENTNKPISIKHRL 137
>UniRef50_A7DP74 Cluster: Dihydroorotate dehydrogenase family
protein; n=1; Candidatus Nitrosopumilus maritimus
SCM1|Rep: Dihydroorotate dehydrogenase family protein -
Candidatus Nitrosopumilus maritimus SCM1
Length = 303
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 LVTCEEDRPLIVQFCGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDD 436
++ +D P+IV G+ PE K E A ++NL CP +AK G + DD
Sbjct: 86 MIEPNQDVPIIVSLVGSIPEDFEKMIKQFENCKVTAYELNLSCPH-VAK---VGLEVGDD 141
Query: 437 WELLKEIVTAMSKAVSIPITCKV 505
EL+K+IVT + + ++P+ KV
Sbjct: 142 PELVKKIVTTVKNSTNVPVIAKV 164
>UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_4738_3071 - Giardia lamblia ATCC
50803
Length = 555
Score = 44.8 bits (101), Expect = 0.002
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Frame = +2
Query: 125 VVAPMVDASELAWRLLCRRHGANLCYTPMLHS-NVFTKDAKYRKDNLVTCEEDRPLIVQF 301
++APM + +R LC +G + M+ + ++ DA+ + + +++ +Q
Sbjct: 177 MLAPMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQELR-KIKRHPDEKCFGIQL 235
Query: 302 CGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKA 478
G E+M +++ CD ID+N CPQ IA + G+ L + + L V M +
Sbjct: 236 AGRGQELMEIVNFISQCCSCDFIDLNAACPQDIATKKCCGAALAANLKKLVSSVDCMVRG 295
Query: 479 ---VSIPITCKVRI--FEDIDKSVNYAKMLEASGCKLLTVH 586
+P+ K+R + A+ L SG L+VH
Sbjct: 296 GEHYGVPVFLKIRAGDLRGDWTGDSVAQALRLSGLYGLSVH 336
>UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 278
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Frame = +2
Query: 254 DNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQD 433
D+ T P I QF +P ++ + L Y + +DIN GCPQS A G+ L
Sbjct: 26 DDFTTSPTSGPTIAQFGVCSPLEISRSTTLLAPYVNGVDINCGCPQSWACACSIGAALMH 85
Query: 434 DWELLKEIVTAMSKAVSIP-ITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
EL+ E+V A+ K + E ID + ++ +G +T+H
Sbjct: 86 KRELVAEMVKEAKSALKRDGFEGKKTVRETID----FINTVQDAGVDFITIH 133
>UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 318
Score = 44.4 bits (100), Expect = 0.002
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRH--GANLCYTPMLHSNVFTK-DAKYRKDNLVTCEEDRPLIVQ 298
+AP+ + ++R L +H G N P ++ D K KD L P+I Q
Sbjct: 9 LAPIRGLTTASFRSLFCKHFAGFNSSIAPFINPQKRASFDNKMLKDVLPEANMVVPVIPQ 68
Query: 299 FCGNNPE-IMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
NN E +A A +LAE I+ NLGCP + + + GS + +L+ E + +
Sbjct: 69 LLHNNAEDFIALAGRLAELGYKEINWNLGCPAPMVAKKKRGSGMLAHPDLIVEFLEEVLP 128
Query: 476 AVSIPITCKVRI 511
+ + ++ K R+
Sbjct: 129 QIPVKLSIKTRL 140
>UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 2,
putative - Trypanosoma brucei
Length = 435
Score = 44.4 bits (100), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +2
Query: 275 EDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
E P+++Q P I A AA L + D ID+N+GCP+ + G+ L D
Sbjct: 92 EGAPVVLQLGVAEPAIGARAALLCVDDVDGIDVNMGCPKKFSVDNGMGAALMRDPARAAA 151
Query: 455 IVTAMSKAVSIP 490
I+ A+ +AV+ P
Sbjct: 152 ILVAVDEAVNSP 163
>UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase;
n=9; Epsilonproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Helicobacter pylori
(Campylobacter pylori)
Length = 328
Score = 41.5 bits (93), Expect = 0.014
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +2
Query: 110 NNPQFVVAPMVDASELAWRLLCRRHGANLCYTPML--HSNVFTKDAKYRKDNLVTCEEDR 283
N +AP+ ++L +R + ++ G ++ + M+ HS V+ D + E+
Sbjct: 5 NKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLEDH- 63
Query: 284 PLIVQFCGNNPEIMASAAKL--AEEYCDAIDINLGCP-QSIAKRGRYGSFLQDDWELLKE 454
+ Q G+ ++ A + A E+ + ID N GCP +A G L+D L+K
Sbjct: 64 -FMAQISGSKESVVKEAVEKINALEHVNGIDFNCGCPAPKVANHGNGSGLLKDLNHLVKL 122
Query: 455 IVTAMSKAVSIPITCKVRI-FE-DIDKSVNYA 544
+ T + KVR+ FE I K + +A
Sbjct: 123 LKTIRENTSKKITSVKVRLGFEKKIPKEIAHA 154
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,149,261
Number of Sequences: 1657284
Number of extensions: 10642644
Number of successful extensions: 24359
Number of sequences better than 10.0: 286
Number of HSP's better than 10.0 without gapping: 23534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24185
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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