Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c20f
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 199 2e-51
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 77 8e-15
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 63 1e-10
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653... 38 0.006
11_01_0478 - 3691581-3691616,3691693-3691842,3691915-3692955,369... 31 0.68
12_01_0527 - 4177928-4178235,4178849-4181438 30 1.6
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 28 4.8
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 28 4.8
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 6.3
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 28 6.3
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 27 8.4
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 199 bits (485), Expect = 2e-51
Identities = 87/166 (52%), Positives = 122/166 (73%)
Frame = +2
Query: 89 ANWIFELNNPQFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT 268
A+W L +P+ VVAPMVD SEL +R+LCRR+GA YTPMLHS +F+++ K+R T
Sbjct: 54 AHWR-RLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTT 112
Query: 269 CEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELL 448
C+EDRPL VQFC N+P+I+ AAK+ E YCD +DIN GCPQ IA+RG YG+FL ++ L+
Sbjct: 113 CKEDRPLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLV 172
Query: 449 KEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
K +V +S + +P++CK+RIF ++ ++ YAKMLE +G L+ VH
Sbjct: 173 KSLVQNLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVH 218
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 77.4 bits (182), Expect = 8e-15
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Frame = +2
Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVT---------- 268
+ V+APMV L +RLL +GA++ Y + + F K + ++L T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDT 65
Query: 269 -----CEEDRPLIVQFCGNNPEIMA-SAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQ 430
C ++R +V G + + A AA+L AIDIN+GCP+S + G G+ L
Sbjct: 66 VVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALL 125
Query: 431 DDWELLKEIVTAMSKAVSIPITCKVRIFEDIDKSVNYAKMLEASGCKLLTVH 586
EL+ +I+T + + + +TCK+R+ +V A+ +E G L VH
Sbjct: 126 SKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVH 177
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 63.3 bits (147), Expect = 1e-10
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Frame = +2
Query: 128 VAPMVDASELAWRLLCRRHGANL-CYTPMLHSNVFTKDAKYRKDNLVTCEEDRPLI-VQF 301
+AP+ L +R LC+ GA++ C + +N+ A + L+ L VQ
Sbjct: 336 LAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQAS--EWALLRRHSSEDLFGVQI 393
Query: 302 CGNNPEIMASAAKLAEEYC--DAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSK 475
CG P+ +A +L + C D IDIN+GCP I GS L +K IV A S
Sbjct: 394 CGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAAST 453
Query: 476 AVSIPITCKVR--IFEDIDKSVNYAKMLEASGCKLLTVH 586
P+T KVR FE +++ + + G +TVH
Sbjct: 454 VTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVH 492
>02_05_0670 -
30764007-30764135,30764404-30764548,30765200-30765309,
30765578-30765761,30765857-30765969,30766242-30766412,
30766493-30766756,30767537-30767782
Length = 453
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/78 (25%), Positives = 43/78 (55%)
Frame = +2
Query: 338 KLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMSKAVSIPITCKVRIFE 517
++ E DA++IN CP + +R + G+ + D +LL+E+ +++ ++P+ K+
Sbjct: 164 RVEESGVDALEINFSCPHGMPER-KMGAAVGQDCDLLEEVCGWINEKATVPVWAKMT--P 220
Query: 518 DIDKSVNYAKMLEASGCK 571
+I A++ SGC+
Sbjct: 221 NITDITKPARISLKSGCE 238
>11_01_0478 -
3691581-3691616,3691693-3691842,3691915-3692955,
3693007-3693459
Length = 559
Score = 31.1 bits (67), Expect = 0.68
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +2
Query: 74 NNYIMANWIFELNNPQFVVAPMVDASELAWRL 169
N +++++W ++N+ ++V+ MVDA+EL W L
Sbjct: 360 NAFVISSWTLKMNDMRWVMDAMVDATEL-WSL 390
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 564 PDASSILA*FTDLSISSNILTLHVIGMETALDIAVTISFNNSQSS 430
PD+ +L +L++ +NILT + M T L + +S NN S
Sbjct: 488 PDSLHLLTSLIELNLGNNILTGTIPTMPTKLSTVLNLSHNNLSGS 532
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 403 KRKIWILSSR*LGIIERDRDCNVQG 477
+R I+++ SR LG++E D DC +G
Sbjct: 578 ERGIYVVWSRLLGLVECDEDCEFRG 602
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 87 WLTGFLS*IIHNLLWRLWLML 149
W+TG L ++ N+ W LW++L
Sbjct: 180 WVTGTLLMLLSNVTWSLWIVL 200
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 212 LHSNVFTKDAKYRKDNLVTCEEDRPLIVQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQ 391
L S + + + +D + CE+ P + + E+ + L+E Y D D+ CP
Sbjct: 1315 LQSKILPESSSDNQD--IKCEDPSPTPIS---KSKEVSPQSKILSESYLDNQDVERECPS 1369
Query: 392 SI 397
SI
Sbjct: 1370 SI 1371
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 320 IMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKE 454
++A+ + L +E D + L S+++R R FL+ EL+KE
Sbjct: 499 VVATLSSLPDEVVDTVGTVLPSEDSVSERRRKLEFLEMQEELIKE 543
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 375 LMSIASQYSSANFAADAIISGLLPQNCTIKGRSSSQVT 262
++S+ + +AN AA A +S CT+ G QVT
Sbjct: 182 VLSLRNLIDAANIAALAALSTFRRPECTVGGEDGQQVT 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,815
Number of Sequences: 37544
Number of extensions: 279567
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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