Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c20f
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   5e-32
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)           43   2e-04
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   32   0.30 
SB_8162| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_8166| Best HMM Match : DUF729 (HMM E-Value=1.6)                     28   4.9  
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)                  28   4.9  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score =  134 bits (324), Expect = 5e-32
 Identities = 52/93 (55%), Positives = 74/93 (79%)
 Frame = +2

Query: 293 VQFCGNNPEIMASAAKLAEEYCDAIDINLGCPQSIAKRGRYGSFLQDDWELLKEIVTAMS 472
           + FC N+PE+   AA L E  CD +D+NLGCPQ IAKRG YG+FLQD+WELL+++V    
Sbjct: 245 ISFCANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMVKLAH 304

Query: 473 KAVSIPITCKVRIFEDIDKSVNYAKMLEASGCK 571
           + +S+PITCK+R+F+D+ K++ YAKMLE++GC+
Sbjct: 305 EKLSVPITCKIRVFDDVQKTIAYAKMLESAGCQ 337


>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 278 DRPLIVQF-CGNNPEIMASAAKLAEEY-CDAIDINLGCPQSIAKRGRYGSFLQDDWELLK 451
           D+ LI    CG + +   + AK+AE    DA+++NL CP  + +RG  G     D EL++
Sbjct: 607 DKILIASIMCGYSKQDWTTLAKMAEAAGADALELNLSCPHGMGERG-MGLACGQDAELVR 665

Query: 452 EIVTAMSKAVSIPITCKV 505
            I   +  A++IP   K+
Sbjct: 666 NICRWVRAAITIPFFAKL 683


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +2

Query: 221 NVFTKDAKYRKDNLVTCEEDRPLIVQ----FCGNNPEIMASAAKLAEEYCDA--IDINLG 382
           NV T+    R    VT E+   L  Q     CG  P+ M   A+L ++  D   IDIN G
Sbjct: 179 NVNTQTGVVRTHGCVTNEDLIKLRTQEKKRLCGAFPDTMTKCAELLQKETDVDFIDINTG 238

Query: 383 CP 388
           CP
Sbjct: 239 CP 240


>SB_8162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 119 QFVVAPMVDASELAWRLLCRRHGANLCYT 205
           ++ +APMV    L  RLL  R+GA+L YT
Sbjct: 67  KYFLAPMVRIGTLPARLLALRYGADLVYT 95


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 403 KRKIWILSSR*LGIIERDRDC 465
           K+KIW++ SR  G++ +DRDC
Sbjct: 373 KKKIWLVDSR--GLVVKDRDC 391


>SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 104 ELNNPQFVVAPMVDASELAWRLLCRR-HGANLCYTPMLHSNVFTKDAKYRKDNLVTCEED 280
           E +N  FV+AP     ++  R +     G N    P       +KD K R D LV C + 
Sbjct: 192 EGDNRLFVIAPEAGQIDILLRFVSALFEGTNTLIIP--DDCAASKDVKRRSDQLVECADT 249

Query: 281 RP 286
           +P
Sbjct: 250 KP 251


>SB_8166| Best HMM Match : DUF729 (HMM E-Value=1.6)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 131 APMVDASELAWRLLCRRHGANLCYTPMLHSNVF 229
           A M D ++ AWR L  RH A   Y P+    +F
Sbjct: 107 AAMPDTTDTAWRALPERHEAWAPYRPLEEERLF 139


>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
          Length = 144

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 302 CGNNPEIMASAAKLAEEYCDAIDI--NLGCPQSIAKRGRYGSFLQDDWELL 448
           CG    + + A +LA E+ + +    N+GCP  IA RG+    L+  ++++
Sbjct: 55  CGWTGLLESHADRLAREWDERLVRCENVGCPMRIAHRGQAAQILECQYQVV 105


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 119  QFVVAPMVDASELAWRLLCRRHGANLCYTPMLHSNVFTKDAKYRKDNLVTCEEDR 283
            +F+++  +D +   WR    RH   L +       VF+ D ++    + TC  D+
Sbjct: 1647 EFIISSSIDNTAQVWRFDTHRHVTTLQHPDWATCAVFSHDERH----IATCSRDQ 1697


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,687
Number of Sequences: 59808
Number of extensions: 351034
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)