Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19r
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   4.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.6  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +2

Query: 431 ADPLPSLLSIASKLPIPLYFLSRTPSEKKYSPGASDVPARSDPIITV 571
           A PLP L+      PIP    S   S   YSP  S  P    P+  V
Sbjct: 193 ASPLPLLV------PIPQRTASTASSASNYSPSQSPEPESVRPLSLV 233


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  IYIKNFEIFTYKIFQFVLLELNSISSYHIFLTL 161
           +++K   +  Y+IF +V  E +   S  +FLT+
Sbjct: 780 LFVKCVFLMGYQIFDWVQKEQSLAHSVGVFLTI 812


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +2

Query: 503 PSEKKYSPGASDVPARSDP-IITVDAPRANDL 595
           P E+  SP   DVP  S P  I+ D     DL
Sbjct: 48  PEEEAASPTPGDVPTPSSPRSISEDPLNCRDL 79


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 132 ISSYHIFLTLKIIFSHK 182
           +++YH+F+T+  +  HK
Sbjct: 78  LNAYHVFVTMMTLKRHK 94


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 645 NVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTS 535
           N   I +GG+Q V  + K+     +   +G   AGT+
Sbjct: 71  NATDITNGGLQKVAALKKTNPALKALFSLGGYAAGTA 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,756
Number of Sequences: 336
Number of extensions: 3793
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)