Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19r
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...   222   5e-59
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    29   0.51 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.3  

>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score =  222 bits (542), Expect = 5e-59
 Identities = 108/187 (57%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
 Frame = -3

Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAG 541
           TQEVMACG PQATA+ QVA +A  F + VIADGGIQ+VGH++KSL+LGA+ VMMG LLAG
Sbjct: 339 TQEVMACGRPQATAIAQVAEFASQFGIGVIADGGIQNVGHMVKSLSLGATAVMMGGLLAG 398

Query: 540 TSEAPGEYFFSDGVRLKKYRGMGSLEAMESKD-GKGSAMSRYFHKESDKHRVAQGVSGSI 364
           T+E+PGEY+  +G R K YRGMGS+ AME     K ++  RYF  E+D  RVAQGVSG +
Sbjct: 399 TTESPGEYYVREGQRYKSYRGMGSIAAMEGTGVNKNASTGRYF-SENDAVRVAQGVSGLV 457

Query: 363 VDKGSVLRFLPYLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMKRTYSAQLEGNVHGLF 184
           VDKGS+LRFLPYL  G+QH+ QD+G +S+  L E     ++RF  R+ +A  EG++ G  
Sbjct: 458 VDKGSLLRFLPYLYTGLQHALQDIGTKSLDELHEAVDKHEVRFELRSSAAIREGDIQGFA 517

Query: 183 SYEKRLF 163
           +YEKRL+
Sbjct: 518 TYEKRLY 524


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 636 VIADGGIQSVGHIIKSLALGASTVMMG 556
           V+ D G++S   I K+LALGA  V++G
Sbjct: 329 VLFDSGVRSGADIAKALALGAKMVLIG 355


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 453 SKDGKGSAMSRYFHKESDKHR 391
           SK G+GS++SR   K   KH+
Sbjct: 578 SKSGQGSSLSRRASKHESKHK 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,971
Number of Sequences: 5004
Number of extensions: 61304
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)