Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c19r
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551... 196 2e-50
07_03_1271 + 25356087-25356232,25356419-25356543,25356650-253566... 36 0.033
07_01_0379 + 2830475-2830614,2831180-2831304,2831510-2831556,283... 35 0.057
03_06_0215 + 32416097-32416236,32416727-32416851,32417092-324171... 33 0.17
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289... 31 1.2
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098... 29 3.7
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 3.7
06_01_1066 - 8656108-8657622 28 6.5
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 28 6.5
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 8.6
>03_06_0175 +
32152428-32153423,32153692-32153889,32154942-32155121,
32156224-32156481,32157310-32157381
Length = 567
Score = 196 bits (477), Expect = 2e-50
Identities = 102/176 (57%), Positives = 129/176 (73%)
Frame = -3
Query: 690 QATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFF 511
+ATAVY+VASYA+ NVPVIADGGI + GHI+K+L+LGASTVMMGS LAG+ EAPG Y +
Sbjct: 398 KATAVYKVASYAKDHNVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSHEAPGTYEY 457
Query: 510 SDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVSGSIVDKGSVLRFLP 331
DG R+KKYRGMGSLEAM KGS +RY ++ K +VAQGV G++ DKGSVLRF+P
Sbjct: 458 KDGHRVKKYRGMGSLEAMT----KGSD-ARYL-GDTLKLKVAQGVVGAVADKGSVLRFIP 511
Query: 330 YLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMKRTYSAQLEGNVHGLFSYEKRLF 163
Y ++ QDLGA S+ E+ S ++ RT +AQ+EG +HGL SYEK+ F
Sbjct: 512 YTMQAVKQGFQDLGASSLQSAHELLRSETIKLEVRTGAAQVEGGIHGLVSYEKKAF 567
>07_03_1271 +
25356087-25356232,25356419-25356543,25356650-25356696,
25356792-25356869,25356949-25357073,25357312-25357372,
25357723-25357785,25358262-25358331,25358740-25358945,
25359074-25359253
Length = 366
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 642 VPVIADGGIQSVGHIIKSLALGASTVMMG 556
VPV+ DGGI+ + K+LALGA VM+G
Sbjct: 281 VPVLVDGGIRRGTDVFKALALGARAVMVG 309
>07_01_0379 +
2830475-2830614,2831180-2831304,2831510-2831556,
2831838-2831962,2832116-2832182,2832266-2832328,
2832488-2832557,2832642-2832742,2832837-2832941,
2833023-2833211
Length = 343
Score = 35.1 bits (77), Expect = 0.057
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 684 TAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGE 520
+A+ +V AR +PV DGG++ + K+LALGA+ V +G + + A GE
Sbjct: 242 SALEEVVKAARG-QLPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAAGE 295
>03_06_0215 +
32416097-32416236,32416727-32416851,32417092-32417138,
32417445-32417569,32417673-32417739,32417808-32417900,
32418024-32418093,32418193-32418398,32418489-32418677
Length = 353
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 642 VPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGE 520
+PV DGG++ + K+LALGA+ V +G + A GE
Sbjct: 265 IPVYLDGGVRRGTDVFKALALGAAGVFIGRPVVFALAAEGE 305
>04_04_1206 +
31727931-31728048,31728492-31728538,31728782-31728906,
31729067-31729133,31729221-31729283,31729429-31729498,
31729751-31729770,31729840-31729956,31730046-31730227,
31730586-31730640,31731604-31731697,31731791-31731900,
31733167-31733193,31733510-31733701
Length = 428
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 642 VPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRL 493
VPV D G + + K+LALGAS V +G + + GE + +R+
Sbjct: 183 VPVFIDSGFRRGTDVFKALALGASGVFIGRPVLFSLAIDGEAGVRNALRM 232
>04_04_1438 -
33609242-33609349,33609571-33609663,33609840-33609884,
33610000-33610055,33610362-33610468,33610605-33610806,
33611068-33611122,33611129-33611167,33611664-33611725,
33611875-33611988,33612618-33612627,33612750-33612835,
33613008-33613377
Length = 448
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = -3
Query: 588 LALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHK 409
L G+ +V+ S + +S P +G ++ R + + E+KD +G K
Sbjct: 37 LCPGSPSVLRASSSSPSSPQPTAGG-DEGEEEEEGRRLSKQSSWEAKDSEGDDYLYRLGK 95
Query: 408 ESDKHRVAQGVSGSIVDKGSVLRFL 334
E+D +A G IVD V FL
Sbjct: 96 EADNMNIAVGARSGIVDDLFVGNFL 120
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -3
Query: 651 HFNVPVIAD---GGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYR 481
H + P + D G ++S+G I S A + + SL+ G+SE EYF + + R
Sbjct: 537 HPDDPFVEDDQHGSVRSIGVGISSDAADIGSEVRESLIGGSSEGDIEYFNESNLSVSGKR 596
Query: 480 GMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVS 373
+ + KG+ + ++ K + G S
Sbjct: 597 NSQQETEKKRINAKGAKQEQLNFIDNQKGVLPPGAS 632
>06_01_1066 - 8656108-8657622
Length = 504
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 705 ACGCPQATAVYQVASYARHFNV-PVIADGGIQSVGHIIKSLALGAST-VMMGSL 550
AC PQ + A++A HF + P I DG + V +++ LG T V G+L
Sbjct: 93 ACFRPQPSNRLPFATFAEHFRLSPHIDDGSFRFVTRMMERSGLGERTYVPRGNL 146
>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 28 QKNHGICSLYNRYTLKISKSLHTKSFNLFY 117
+ NH + L + L++SK++ TKSF Y
Sbjct: 925 RSNHSLEPLVQAFLLRLSKTIKTKSFQQLY 954
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 452 LSIASKLPIPLYFLSRTPSEKKYSPGASDVPARSD 556
++ A+ +PIP+ ++ + + SPG+S PARSD
Sbjct: 551 MAAAAAIPIPIPCVAEPTAASRVSPGSS--PARSD 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,412,557
Number of Sequences: 37544
Number of extensions: 372358
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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