Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c19r
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0) 137 1e-32
SB_34913| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 2e-30
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 7e-25
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.2
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 28 6.7
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_54135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_53043| Best HMM Match : JmjC (HMM E-Value=4.1) 28 8.8
SB_31093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_14141| Best HMM Match : HH_signal (HMM E-Value=0) 28 8.8
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
Length = 876
Score = 137 bits (331), Expect = 1e-32
Identities = 66/82 (80%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = -3
Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAG 541
TQEVMA G PQATAV++VA YAR F +PVIADGGI++VGHI K+L++GASTVMMGSLLAG
Sbjct: 526 TQEVMAVGRPQATAVFKVAEYARRFGIPVIADGGIRTVGHITKALSVGASTVMMGSLLAG 585
Query: 540 TSEAPGEYFFS-DGVRLKKYRG 478
TSEAPGEY+FS DGVRLKKYRG
Sbjct: 586 TSEAPGEYYFSNDGVRLKKYRG 607
>SB_34913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 129 bits (312), Expect = 2e-30
Identities = 61/107 (57%), Positives = 86/107 (80%)
Frame = -3
Query: 483 RGMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVSGSIVDKGSVLRFLPYLQAGMQHS 304
+ MGSL+A+E+K S+ SRYF ES++ +VAQGVSG++VDKGS+ RF+PYL +G+QH
Sbjct: 24 KSMGSLDALENK----SSQSRYFI-ESERIKVAQGVSGAVVDKGSIHRFVPYLLSGLQHG 78
Query: 303 CQDLGARSVSVLREMSHSGDLRFMKRTYSAQLEGNVHGLFSYEKRLF 163
CQD+G +S+SVLR M +SG L+F KR+ +A++EG +H L SYEKRL+
Sbjct: 79 CQDMGCQSLSVLRSMMYSGQLKFEKRSSAARIEGGIHSLHSYEKRLY 125
>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 111 bits (266), Expect = 7e-25
Identities = 49/76 (64%), Positives = 65/76 (85%)
Frame = -3
Query: 408 ESDKHRVAQGVSGSIVDKGSVLRFLPYLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMK 229
E+DK +VAQGVSGS+VDKGS+ +F+PYL AG+QH CQDLGA+S++ LR M +SG+L+F +
Sbjct: 372 ENDKVKVAQGVSGSVVDKGSIHKFVPYLTAGIQHGCQDLGAKSLTSLRSMMYSGELKFER 431
Query: 228 RTYSAQLEGNVHGLFS 181
RT S+Q+EG VHGL S
Sbjct: 432 RTTSSQIEGGVHGLHS 447
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -3
Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVI 631
TQEVMA G PQ TAVY+VA YAR F + V+
Sbjct: 318 TQEVMAVGRPQGTAVYKVAEYARRFGLFVL 347
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 615 QSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKG 436
+ V I+K + V + +L++G + P Y +++GVR R +L E DGK
Sbjct: 346 KDVPQIVKDTLVANVGVPLKALISGLANRPLRYVYTNGVRDTSRRTSQTLPTGERLDGKK 405
Query: 435 --SAMSRYF 415
+ M YF
Sbjct: 406 TYAGMISYF 414
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 500 TPSEKKYSPGASDVPARSDPIIT---VDAPRAND 592
T S+ + +P ASDVPA SD +T D P A+D
Sbjct: 681 TTSDDQVTPSASDVPAASDNQVTPSASDVPSASD 714
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 506 SEKKYSPGASDVPARSDPIIT---VDAPRAND 592
S+ + +P ASDVP+ SD +T +D P +D
Sbjct: 698 SDNQVTPSASDVPSASDDQVTPSAIDVPTTSD 729
>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 8 QVKHNTYKKTMEYVHYITDIH*KFRNLYIQNLSICFIRAQQYFILSHIFD 157
++KH ++KK E +H D+ K + L + LS +A+ YF L FD
Sbjct: 148 KLKHESWKKHQEDLHAYRDLESKVKQL-SKKLSSAVGKARPYFELKSDFD 196
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 344 STEPLSTILPLTP*ATLCLSDSLWKYLLIADPLPSLLSIASKLPIPL 484
STEPLS P T LS+S I DPLP + S P P+
Sbjct: 749 STEPLSNSPEPPPNITEPLSNSTEPLSNITDPLPIITEAVSNSPEPV 795
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -3
Query: 633 IADGGIQSVGHIIKSLALGASTVMMGSLLAGTSE-APGEYFFSDGVRLKKYRGMGSLEAM 457
+A+G ++ + ++A A+ G++ A TS G +F+ D LKK R G ++
Sbjct: 854 VANGASKASRKTVSNVAFKAAA-KAGAVAAVTSAIVGGAFFYKDMKELKKARDEGKMDGK 912
Query: 456 ESKDGKGSAMSRYFHKESDKHRVAQGVS 373
+ + + ++ Y VA G++
Sbjct: 913 KYRCKRNGRIAEYATDVVSSGAVATGLA 940
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 568 CNDGITPC--GDI*GPWRILLL*WSSAQEIQRNGKLRSYG 455
C+D + C G+ G W+ W + +E+ R GK+RS G
Sbjct: 435 CDDFLLTCAEGEPRGTWKES---WKAMEELHRQGKIRSLG 471
>SB_54135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 1 FISSKTQYIQKNHGICSLYNRYTLKISKSLHTKSFNLFY*SSTVFHLIT 147
F++ ++ K++ + ++NR T+KIS S ++ FY S V H+ T
Sbjct: 62 FLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTY--FYIQSIVSHIKT 108
>SB_53043| Best HMM Match : JmjC (HMM E-Value=4.1)
Length = 236
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 1 FISSKTQYIQKNHGICSLYNRYTLKISKSLHTKSFNLFY*SSTVFHLIT 147
F++ ++ K++ + ++NR T+KIS S ++ FY S V H+ T
Sbjct: 189 FLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTY--FYIQSIVSHIKT 235
>SB_31093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 636 VIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGE 520
V DGG++ + K+LALGA V +G + GE
Sbjct: 248 VYMDGGVRLGTDVFKALALGARAVFLGRAVIWGLACKGE 286
>SB_14141| Best HMM Match : HH_signal (HMM E-Value=0)
Length = 754
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 413 WKYLLIADPLPSLLSIASKLPIPLYFLSRTPSEKKYSPGASDVP 544
W L A+ S S++ + PLYF R P ++S GAS P
Sbjct: 93 WFSLDFANSCSSRPSLSRRGRRPLYFKQRVPDVDEFSLGASGRP 136
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 1 FISSKTQYIQKNHGICSLYNRYTLKISKS 87
F+S ++ +K+H + ++NR T+KIS S
Sbjct: 102 FLSLIDKHFRKDHKLSKIFNRNTIKISYS 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,530,734
Number of Sequences: 59808
Number of extensions: 448454
Number of successful extensions: 1125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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