Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c19r
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 212 2e-55
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 126 1e-29
AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical ... 64 1e-10
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 34 0.12
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 31 0.83
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 4.4
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 212 bits (518), Expect = 2e-55
Identities = 105/187 (56%), Positives = 138/187 (73%), Gaps = 1/187 (0%)
Frame = -3
Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAG 541
TQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LGAS VMMG LLA
Sbjct: 351 TQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLGASAVMMGGLLAA 410
Query: 540 TSEAPGEYFFSDG-VRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVSGSI 364
T+EAPGEYF+ G VR+KKYRGMGSL+AME+ S+ RYF ESD+ +VAQGVS ++
Sbjct: 411 TTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAH---ASSQDRYFTAESDQIKVAQGVSATM 467
Query: 363 VDKGSVLRFLPYLQAGMQHSCQDLGARSVSVLREMSHSGDLRFMKRTYSAQLEGNVHGLF 184
D+GS +F+PYL G+QH QD+G RS+ RE +G ++F +R+ +AQLEG VH L
Sbjct: 468 KDRGSCHKFIPYLIRGVQHGMQDIGVRSLRDFREKVDNGIVKFERRSTNAQLEGGVHSLH 527
Query: 183 SYEKRLF 163
S+EKRL+
Sbjct: 528 SFEKRLY 534
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 126 bits (305), Expect = 1e-29
Identities = 63/103 (61%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Frame = -3
Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAG 541
TQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LGAS VMMG LLA
Sbjct: 351 TQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLGASAVMMGGLLAA 410
Query: 540 TSEAPGEYFFS-DGVRLKKYRGMGSLEAMESKDGKGSAMSRYF 415
T+EAPGEYF+ GVR+KKYRGMGSL+AME+ S+ RYF
Sbjct: 411 TTEAPGEYFWGPGGVRVKKYRGMGSLDAMEA---HASSQDRYF 450
>AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical
protein F32D1.5 protein.
Length = 358
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/151 (27%), Positives = 74/151 (49%)
Frame = -3
Query: 720 TQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAG 541
T++ G PQ +AV + A A N V++DGG + G + K+ GA VM+G L AG
Sbjct: 189 TRKKAGVGYPQLSAVLECADAAHGLNGHVMSDGGCSNPGDVAKAFGAGADFVMIGGLFAG 248
Query: 540 TSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFHKESDKHRVAQGVSGSIV 361
++ G+ +G + K + GM S AM+ G + ++R ++G + +I
Sbjct: 249 HDQSGGDLIEHNGKKFKLFYGMSSDTAMKKHHGSVA-----------EYRASEGKTVTIP 297
Query: 360 DKGSVLRFLPYLQAGMQHSCQDLGARSVSVL 268
+G V + + G++ +C GA+ + L
Sbjct: 298 YRGDVNGTVQDILGGIRSACTYTGAKHLKEL 328
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +2
Query: 308 CCMPACK*GRNLSTEPLSTILPLTP*A-TLCLSDSLWKYLLIADPLPSLLSIASKLPIPL 484
C A + +N+ + PL+T P+TP T C S++ L A+ +P S LP+P
Sbjct: 254 CANAAARYNKNVPSLPLNTPKPITPVVITECASNTNGSCSL-AEDMP------SALPVPT 306
Query: 485 YFLSRTPSEKKYSPGASDVPA--RSD 556
S++P E P S PA RSD
Sbjct: 307 AQSSKSPKESSKEPPKSLCPAINRSD 332
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 31.1 bits (67), Expect = 0.83
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = -3
Query: 591 SLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMESKDGKGSAMSRYFH 412
++ +G + G + G S+ + D R +Y + + EA K KG +
Sbjct: 438 TIKIGDQNIAEGLISRGLSKVV-RHRADDENRSSEYDTLLAAEANAEKGKKGLFADKTAE 496
Query: 411 KESDKHRVAQGVSGSIVDKGSVLRFLPYLQAG 316
K+ D HR+ Q ++G D +FLPYLQ G
Sbjct: 497 KK-DTHRI-QEITG---DLAKAKQFLPYLQRG 523
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 458 IASKLPIPLYFLSRTPSEKKYSPGASDVPARSDPI 562
I +KLP + ++R +K+ SP ASD P + P+
Sbjct: 868 IPNKLPQNMERMARKTRKKRSSPSASDPPVPTSPL 902
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 516 FFSDGVRLKKYRGMGSLEAMESKDGK-GSAMSRYFHKESDKHRVAQGVSGSIVDKGSVLR 340
F DGV + +RG +LE S + K G A SR FH D + VSG +LR
Sbjct: 79 FEMDGVNVSAHRGEFALELFMSGNAKIGIANSR-FH---DNKKGGVRVSGKFQSPNVILR 134
Query: 339 FLPYLQ-AGMQHSCQDLGARSVSV 271
+L+ +G + G S+SV
Sbjct: 135 DCRFLRNSGEIIIFNEFGQSSLSV 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,246
Number of Sequences: 27780
Number of extensions: 336582
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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