Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19r
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.72 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.96 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 624 GGIQSVGHII-KSLALGASTVMMGSLLAGTSEAPGEYF 514
           GGI+ + HII K L +  S V+MG+ LA  SE   E F
Sbjct: 129 GGIELISHIISKQLHIPVS-VLMGANLA--SEVANEMF 163


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 345 VLNLYQQYYH*LPEQLYVCQILCG 416
           V+NLYQQY   LP   Y   IL G
Sbjct: 441 VMNLYQQYQQSLPVYQYNDLILPG 464


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 5   YQVKHNTYKKTMEYVHYITDI 67
           Y+  +N Y K + Y +YI +I
Sbjct: 329 YKYNYNNYNKKLYYKNYIINI 349


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 5   YQVKHNTYKKTMEYVHYITDI 67
           Y   +N Y K + Y +YI +I
Sbjct: 104 YNYNNNNYNKKLYYKNYIINI 124


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 679 CSGLRTTTSHH 711
           C+GL TTT+H+
Sbjct: 405 CNGLHTTTAHN 415


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 625 WWNSVSWSYY*IIGPWGIDCNDG-ITPC 545
           W  ++ W+   ++G WG    +G +T C
Sbjct: 170 WTYTIPWALMPVMGVWGRFVPEGFLTSC 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,715
Number of Sequences: 438
Number of extensions: 4062
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)