Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c19f
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 91 1e-19
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 30 0.29
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 29 0.66
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 1.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 26 3.5
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 6.2
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 6.2
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 25 6.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 8.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.1
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Frame = +3
Query: 324 TKKMSLKTEGDLRDGLSAEDTFANS--EGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKIL 497
T+ + + + + +DGLS +D ++ GLT+NDFL+LPGYIDF V L + +++ I+
Sbjct: 8 TEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVSLETRISRNIV 67
Query: 498 LKAPLVSTPMDTVTEADMAISMALCGGIG 584
LK P +S+PMDTVTE MAI MAL GGIG
Sbjct: 68 LKTPFMSSPMDTVTEDQMAIYMALLGGIG 96
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 520 VDTRGAFNRIFLVSGDVKSTSSAVKSIYP-GSSKKSLYVSPSLLAKVSSADNPSRRSPSV 344
+ T GA +GD ++TSS S+ P SS + V+P + V+++ P S V
Sbjct: 55 ISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSAVV 114
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 28.7 bits (61), Expect = 0.66
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 581 NSTAKRHGYGHVSFCHCVHWSR 516
N+ +HG GHV F C++ SR
Sbjct: 7 NNGRNKHGRGHVKFVRCINCSR 28
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.5
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = -2
Query: 580 IPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGD----VKSTSSAVKSIYPGSSKKSL 413
+P +++++++S+S S T F+ + + V STSS+ S +S S
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 412 YVSPSLLAKVSSADNPSRRSPS 347
Y+S S + VSS+ +PS S S
Sbjct: 209 YLSSS--SVVSSSSSPSSSSSS 228
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 445 SIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPSVFNDIFFVRDIFL 308
SI+P S KK + VSP +L S S S ++ ++FL
Sbjct: 537 SIFPTSDKKHIVVSPVMLTMAESLSQSPADSLSDVCKKLYIANLFL 582
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 402 GLTYNDFLLLPGY----IDFTAEEVDLTSPLTKKILLK 503
G TYND P + D+T++E+DL +P T + K
Sbjct: 1941 GRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYRNFCK 1978
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -2
Query: 487 LVSGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPS 347
LVS S+SSA S SS S S S SS+ S RS S
Sbjct: 128 LVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 581 NSTAKRHGYGHVSFCHCVHWSR 516
N +HG GH F C++ SR
Sbjct: 7 NCGRNKHGRGHTKFVRCINCSR 28
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 352 ATSEMGYLLRIPSLTVKDLHITISYC 429
A +E G L IPSL + L+IT+ YC
Sbjct: 142 AMAERGRL--IPSLVISFLYITLVYC 165
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 275 VLVNQIKSDLEKKYITYEKNVIKDGRRPPRWVI 373
V VNQ+ D+ + Y KNVI++ W +
Sbjct: 430 VQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAV 462
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 391 AKVSSADNPSRRSPSVFNDIFFVRDIFLL*IRFYLIYQYW 272
A +S+D P+ S ++FF+++I +L YL+Y+ W
Sbjct: 13 AVFASSDKPNNCSRK---NMFFLKNIIVLSNYLYLLYKAW 49
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = -2
Query: 583 PIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLYVS 404
P+ P A++ + T + V + N F V ++ S + YP S+ Y +
Sbjct: 340 PLQPARTGPAAINYNYTTNYSVSSPSVTNPFFDVGSSTQNASLMGSTGYPSSANNVYYEN 399
Query: 403 PSLLAKVSSADN 368
S +DN
Sbjct: 400 SYQGVGTSMSDN 411
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 308 KKYITYEKNVIKDGRRPPRW 367
K Y Y++ V +DGR P W
Sbjct: 602 KAYEAYQQAVYRDGRNPTFW 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,928
Number of Sequences: 5004
Number of extensions: 42663
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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