Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19f
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551...    71   5e-13
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996...    28   4.8  
07_03_0105 + 13455906-13457198                                         27   8.3  

>03_06_0175 +
           32152428-32153423,32153692-32153889,32154942-32155121,
           32156224-32156481,32157310-32157381
          Length = 567

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 34/71 (47%), Positives = 47/71 (66%)
 Frame = +3

Query: 363 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 542
           DG  A   F+     TY+D + LPGYI F A+ VDL++ L+++I L  P V++PMDTV+E
Sbjct: 11  DGFPAPRLFSQGVSYTYDDVIFLPGYIGFPADAVDLSTRLSRRIPLSIPCVASPMDTVSE 70

Query: 543 ADMAISMALCG 575
           A MA +MA  G
Sbjct: 71  AAMAAAMASLG 81


>03_05_0207 -
           21985340-21985570,21986430-21986636,21999578-21999667,
           21999764-21999945,22000130-22001042,22003184-22003266,
           22004622-22004939,22005044-22005107
          Length = 695

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/80 (25%), Positives = 29/80 (36%)
 Frame = -2

Query: 583 PIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLYVS 404
           P+PP        S      IGV     +N++      VK  ++  +  +    KK  Y S
Sbjct: 159 PLPPMDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDYSS 218

Query: 403 PSLLAKVSSADNPSRRSPSV 344
             LL   S     S+R   V
Sbjct: 219 KDLLQHASGVGAASKRKAKV 238


>07_03_0105 + 13455906-13457198
          Length = 430

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 504 APLVSTPMDTVTEADMAISMALCGGI 581
           A   STP DT+     A S+ LCGG+
Sbjct: 251 AAAFSTPYDTIARHTDAKSVVLCGGV 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,872
Number of Sequences: 37544
Number of extensions: 232972
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)