Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19f
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                      101   4e-22
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                44   7e-05
SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)              31   0.69 
SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)           30   1.6  
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)             28   4.9  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      28   6.4  
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)                        28   6.4  
SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                27   8.5  

>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score =  101 bits (242), Expect = 4e-22
 Identities = 46/74 (62%), Positives = 60/74 (81%)
 Frame = +3

Query: 363 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 542
           DGL+A   F   +GLTY+DFL+LPG+IDF+A+ V+L S LT++I LK P VS+PMDTVTE
Sbjct: 209 DGLTANALFGGGQGLTYDDFLILPGFIDFSADVVELNSALTREITLKTPFVSSPMDTVTE 268

Query: 543 ADMAISMALCGGIG 584
           + MA++MAL GGIG
Sbjct: 269 SAMAVAMALHGGIG 282


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +3

Query: 363 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEV 464
           DG++A   F  S+GLTY+DF++LPG+IDF A +V
Sbjct: 16  DGMTAGQLF-QSDGLTYSDFIILPGFIDFPATDV 48


>SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)
          Length = 243

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +3

Query: 333 MSLKTEGDLRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPL 512
           +S    G L  G+S E  F + + L     ++L G        +      T K L   PL
Sbjct: 127 LSFILSGSLIIGISCESLFKSKQELQPRSLIILSGTAAIVNGILSYIIFNTSKRLRSVPL 186

Query: 513 VSTPMDTVTEADMAISM 563
           ++  +DTV EA M++ +
Sbjct: 187 LTLSIDTVFEALMSLGV 203


>SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 539 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 450
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 493 CHCTRHSKNCGCFSEQFLKNAR--VNHFCC 520


>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 306 RRNISRTKKMSLKTEGDLRDGLSAEDTFANSEGLTYNDFL 425
           RR I +T    LKT  DLRD +       +   LTYN FL
Sbjct: 112 RRKIKKTPSAKLKTLTDLRDFILNYKRNGDPALLTYNPFL 151


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 539 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 450
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 512 CHCTRHSKNCGCFSKQFLKNAR--VNHFCC 539


>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
          Length = 416

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +3

Query: 309 RNISRTKKMSLKTEGDLRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTK 488
           R+I ++++   +  G L   +S +  F   + L     L+L G        +      T 
Sbjct: 122 RDIDQSREEQRRPSGVLSIAISCDSLFKTKQELPPKSTLILSGISAAVNGILSYILFKTA 181

Query: 489 KILLKAPLVSTPMDTVTEADMAISM 563
           K L   PL+   +DTV EA +++ +
Sbjct: 182 KRLRNVPLLVLSIDTVLEALLSLGL 206


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 469 KSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 350
           +S SSA K+   GSS K++  S S   K S + +P++ +P
Sbjct: 334 RSASSASKTPRSGSSAKTIQKSGSPAPKTSRSGSPAQGTP 373


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 227 IFSRETTLPAFLITLPVLVNQIKSDLEK 310
           I+SR+  L  FL T+PVL++  + + EK
Sbjct: 235 IYSRQIFLTPFLSTIPVLIDDNRPNYEK 262


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 466 STSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 350
           STSS  ++    SS+     S S L+ VSS+   SRRSP
Sbjct: 268 STSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSP 306


>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 466 STSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 350
           STSS  ++    SS+     S S L+ VSS+   SRRSP
Sbjct: 268 STSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSP 306


>SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 481 SGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPS 347
           SG  K   +AVK+  P  +KK     P    K ++   PS+++ S
Sbjct: 117 SGSFKLNKAAVKADKPKKAKKPAAKKPKAAKKPAAKTTPSKKAKS 161


>SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 481 SGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPS 347
           SG  K   +AVK+  P  +KK     P    K ++   PS+++ S
Sbjct: 80  SGSFKLNKAAVKAEKPKKAKKPAAKKPKAAKKPAAKTTPSKKAKS 124


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 481 SGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPS 362
           S DV    S  KS++PGS   SL +   +    SS  +PS
Sbjct: 194 SNDVNILRSPFKSLFPGSLSPSLSLGNDMRMSFSSELSPS 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,384
Number of Sequences: 59808
Number of extensions: 286348
Number of successful extensions: 783
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)