Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c19f
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,...    78   5e-15
At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase ...    77   9e-15
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain...    29   3.0  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    28   4.0  
At2g22850.1 68415.m02713 bZIP transcription factor family protei...    28   4.0  
At1g49190.1 68414.m05515 two-component responsive regulator fami...    28   5.3  

>At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,
           putative strong similarity to SP|P47996 gb|L34684
           inosine monophosphate dehydrogenase (IMPDH) from
           Arabidopsis thaliana; member of the PF|00478 IMP
           dehydrogenase family
          Length = 502

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 35/74 (47%), Positives = 51/74 (68%)
 Frame = +3

Query: 363 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 542
           DG SAE  F+     TY+D + LP +IDF+ + V L++ L+K++ L  P V++PMDTV+E
Sbjct: 6   DGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTVSE 65

Query: 543 ADMAISMALCGGIG 584
           + MA +MA  GGIG
Sbjct: 66  SHMAAAMAALGGIG 79


>At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase
           identical to inosine-5'-monophosphate dehydrogenase
           SP|P47996 {Arabidopsis thaliana}
          Length = 503

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 35/76 (46%), Positives = 51/76 (67%)
 Frame = +3

Query: 357 LRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTV 536
           L DG  A+  FA     TY+D + LP +IDF+ + V L++ L++++ L  P VS+PMDTV
Sbjct: 4   LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63

Query: 537 TEADMAISMALCGGIG 584
           +E+ MA +MA  GGIG
Sbjct: 64  SESHMAAAMASLGGIG 79


>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 298

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 375 AEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAP 509
           +E+T    E + +N F LLP  +DF     +    +  +  LK P
Sbjct: 143 SEETSTIMESMDFNGFQLLPSQVDFVRHMFEKHPEIASEFRLKNP 187


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 200 LLKDNYHVWIFSRETTLPAFLITLPVLVNQIKSDLEKKYITYEKNVIKD 346
           +LKD  H    +R+TTL  F+I L VL N I +     Y  ++KN  ++
Sbjct: 414 ILKDR-HDKATNRDTTLAIFMIVLAVLSNAI-AIYSDAYALFKKNAPRE 460


>At2g22850.1 68415.m02713 bZIP transcription factor family protein
           contains a bZIP transcription factor basic domain
           signature (PDOC00036)
          Length = 227

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 242 TTLPAFLITLPVLVNQIKSDLEKKYITYEKN 334
           +T+PAF  T P LVNQ+ SD +  +  +E N
Sbjct: 3   STVPAFTFTEPGLVNQL-SDFQTGFTPWELN 32


>At1g49190.1 68414.m05515 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
           ;contains similarity to two-component response regulator
           protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 242 TTLPAFLITLPVLVNQI-KSDLEKKYITYEKNVIKDGRRPP 361
           TT+P++L+  P  +NQI ++  +  ++T   N I     PP
Sbjct: 508 TTIPSYLMNGPATLNQIQQNQYQNGFLTMNNNQIITNPPPP 548


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,167
Number of Sequences: 28952
Number of extensions: 205977
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)