Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c18f
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_39997| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 45 6e-05
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.034
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 35 0.060
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 32 0.42
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035) 29 3.0
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 28 5.2
SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10) 28 6.9
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 6.9
SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 27 9.1
>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/125 (35%), Positives = 66/125 (52%)
Frame = +1
Query: 199 FDLVKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKY 378
FD +++W A+KL H Y + E+ R I+ ++ I KHN + S+ L MN
Sbjct: 240 FDEDEQQWQAWKLFHTKKYTTVTEEGARKAIWRDNLKKIQKHNAEGH----SFTLAMNHL 295
Query: 379 GDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTDI 558
GD+ EF G H N K GS F++P++V++P+ VDWRK G VT +
Sbjct: 296 GDLTQDEFRYFYTGMRS---HYSNYTKKQGSA----FLAPSHVQVPDTVDWRKEGYVTPV 348
Query: 559 KDQGE 573
K+QG+
Sbjct: 349 KNQGQ 353
Score = 35.1 bits (77), Expect = 0.045
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +2
Query: 560 RTKGKCGSCWSFSTTGA 610
+ +G+CGSCW+FSTTG+
Sbjct: 349 KNQGQCGSCWAFSTTGS 365
>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 72.9 bits (171), Expect = 2e-13
Identities = 43/118 (36%), Positives = 63/118 (53%)
Frame = +1
Query: 220 WSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHE 399
W A+K H Y ++ E+ R I+ + I HN+ G S+KL MN GDM E
Sbjct: 29 WKAWKSFHGKEYPNKNEETMRNFIWQNNLKKIVTHNE----GKHSFKLAMNHLGDMTSLE 84
Query: 400 FVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTDIKDQGE 573
+T+ G K KH ++ +GA F+ PANVK+ + +DWR G VT +K+QG+
Sbjct: 85 ISQTLLGL-KLKKHAES------QPKGATFLPPANVKVVDSIDWRSKGYVTPVKNQGQ 135
Score = 36.3 bits (80), Expect = 0.020
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 560 RTKGKCGSCWSFSTTGA 610
+ +G+CGSCW+FSTTGA
Sbjct: 131 KNQGQCGSCWAFSTTGA 147
>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/117 (34%), Positives = 59/117 (50%)
Frame = +1
Query: 217 EWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHH 396
+W A+K H Y E ED R I+ ++ I+ KHN + SYKL MN + D+
Sbjct: 180 QWHAWKDFHGKTYTGEEED-LRRAIWNDNLEIVKKHNAENH----SYKLDMNHFADLTVT 234
Query: 397 EFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTDIKDQ 567
EF + G+ + S G+ F+ +NV+LP +VDWR G VT +K+Q
Sbjct: 235 EFKQRFMGYRAASN----------STGGSTFLPLSNVQLPAEVDWRDKGFVTAVKNQ 281
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 572 KCGSCWSFSTTGA 610
+CGSCW+FS+TG+
Sbjct: 344 QCGSCWAFSSTGS 356
>SB_39997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 367 MNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGA 546
MN++ DM EF + A + RGA F++P N++LP +VDWR+ G
Sbjct: 1 MNEFADMCEEEFRNVYLRYRFNASSPQ---------RGATFMAPNNLELPTKVDWRQQGY 51
Query: 547 VTDIKDQGEVWLMLVLQH 600
VT +K+QG+ ++L H
Sbjct: 52 VTPVKNQGKYTIVLHHAH 69
>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 1220
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = +1
Query: 361 LGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKH 540
+ MN GD+ EF G A HN K G A ++ P+NVK+P VDW +
Sbjct: 1 MAMNHLGDLTEDEFRYFYLGVR--AHHNST---KRG---WATYMPPSNVKIPSSVDWSQK 52
Query: 541 GAVTDIKDQGE 573
G VT +K+QG+
Sbjct: 53 GYVTGVKNQGQ 63
Score = 35.1 bits (77), Expect = 0.045
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +2
Query: 560 RTKGKCGSCWSFSTTGA 610
+ +G+CGSCW+FSTTG+
Sbjct: 59 KNQGQCGSCWAFSTTGS 75
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 38.3 bits (85), Expect = 0.005
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +1
Query: 238 QHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMN 417
+H+ NY+ E + R + + + I N+++ Y L MN GD E ++ +
Sbjct: 562 KHKKNYKDNKEHHTRREHFKHNLRFIHSKNRRH----AGYYLAMNHLGDRSDKE-LRVLR 616
Query: 418 GFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTDIKDQ---GEVW 579
G T +N L K ++ N +P++++W GAVT +KDQ G W
Sbjct: 617 GRRYTKGYNGGLPYKPD-------MASIN-DVPDEMNWVIRGAVTPVKDQAVCGSCW 665
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 575 CGSCWSFSTTG 607
CGSCWSF TTG
Sbjct: 661 CGSCWSFGTTG 671
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 35.5 bits (78), Expect = 0.034
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +1
Query: 202 DLVKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYG 381
DLV +++ F+ QH YE + E R I+ + I N++ + YKL N +
Sbjct: 1188 DLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRR----SLPYKLEPNHFA 1243
Query: 382 DMLHHEFVKTMNGFNKTAKHNKN 450
D+ EF + + +K N
Sbjct: 1244 DLTDDEFKSYKDALDDESKDVMN 1266
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 505 VKLPEQVDWRKHGAVTDIKDQG 570
V LP VDWRK GAV +K QG
Sbjct: 497 VPLPPHVDWRKAGAVNSVKSQG 518
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 415 NGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTD 555
N NK +H K ++ K K S ++P+Q+DWR +G TD
Sbjct: 1386 NRKNKKKEHKKRMHAK-------KKRSKRMFEVPDQLDWRNYGNKTD 1425
>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 202 DLVKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYG 381
DLV +++ F+ QH YE + E R I+ + I N++ + YKL N +
Sbjct: 38 DLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRR----SLPYKLEPNHFA 93
Query: 382 DMLHHEFVKTMNGFNKTAKHNKN 450
D+ EF + +K N
Sbjct: 94 DLTDDEFKSYKGALDDESKDVMN 116
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 34.7 bits (76), Expect = 0.060
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 202 DLVKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYG 381
DLV +++ F+ QH YE + E R I+ + I ++ + YKL N +G
Sbjct: 38 DLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRR----SLPYKLEPNHFG 93
Query: 382 DMLHHEF 402
D+ EF
Sbjct: 94 DLTDDEF 100
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +1
Query: 202 DLVKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYG 381
DLV +++ F+ QH YE + E R I+ + I N+ + YKL N +
Sbjct: 209 DLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNR----CSLPYKLEPNHFA 264
Query: 382 DMLHHEFVKTMNGFNKTAKHNKN 450
D+ EF + +K N
Sbjct: 265 DLTDDEFKSYKGALDDESKDVMN 287
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 557 SRTKGKCGSCWSFSTTGA 610
++ +G CGSCW+F+T GA
Sbjct: 146 AKGQGTCGSCWAFATAGA 163
>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
Length = 396
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -1
Query: 460 SCTDSCCVWQFCXXXXXXXRTRGGACLRTCSCPACKKRGPFRTSGCVWR*CACAQRISSC 281
SC++ CC+ Q C GG C+ C P KK T C R C SC
Sbjct: 129 SCSNGCCLGQRC--------LNGGTCVEHCEDPK-KKFSCACTPSCSGRTCESCGTYRSC 179
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 208 VKEEWSAFKLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGDM 387
++ + ++ QH Y+SE E + R I+ + I N+K + YKL N + D+
Sbjct: 257 IERMYRKYQGQHNKQYDSEHEVSKRKHIFRHNMRYIRSINRKN----LKYKLAPNHFVDL 312
Query: 388 LHHEF 402
E+
Sbjct: 313 TDGEY 317
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = -1
Query: 475 GRSHPSCTDSCCVWQFCXXXXXXXRTRGGACLRTCSCPAC 356
GR CT C+ FC GG C C+ C
Sbjct: 254 GRCWQDCTGGKCLNMFCNSRMCIQSCGGGGCKMRCNALKC 293
>SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)
Length = 281
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 277 FRMKIYAEHKHIIAKHNQ---KYEMGLVSYKLGMNKY 378
+RM + A+ + ++AK+ KY MG+ Y++G+ KY
Sbjct: 148 YRMGV-AKCRMVVAKYRMGVAKYRMGVAKYRMGVAKY 183
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 185 VLFSSLTWSRKSGVPSSCSTVSTTKARSKTISA*RY 292
VL L+W R + +C TV T R +T+ A Y
Sbjct: 336 VLVEQLSWFRPTSFVETCLTVRTIATRLRTLCAYAY 371
>SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 400 FVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTDIKDQGEV 576
F +NG K A+ L MKGG + A VK+ E + G + + ++GEV
Sbjct: 217 FPMLINGVKKAARTGYGLLMKGGKNASLDAVEAA-VKVLEDIAVFNAGHGSKLNNRGEV 274
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 560 RTKGKCGSCWSFSTTGA 610
R +G CGSCW+F A
Sbjct: 105 RDQGACGSCWAFGAVEA 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,157,747
Number of Sequences: 59808
Number of extensions: 377041
Number of successful extensions: 1293
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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