Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c18f
         (613 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    28   0.27 
Y17703-1|CAA76823.1|  111|Anopheles gambiae D7r1 protein protein.      27   0.48 
AY045760-1|AAK84942.1|  165|Anopheles gambiae D7-related 1 prote...    27   0.48 
AJ133852-1|CAB39727.1|  165|Anopheles gambiae D7-related 1 prote...    27   0.48 
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   1.9  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   3.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.8  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 249 QLRKRGRRQFPHEDIR*AQAHHRQTQPEVRNGPRFLQAGHEQVRRHAPPRVREDYERLQQ 428
           Q +++G R  P + +R  Q   +Q +P  +   +  Q   +Q  R+ PP++R+  ++ Q 
Sbjct: 256 QQQQQGERYVPPQ-LR--QQRQQQQRPRQQQQQQ-QQQQQQQGERYVPPQLRQQRQQQQH 311

Query: 429 NCQTQQE 449
             Q QQ+
Sbjct: 312 QQQQQQQ 318



 Score = 27.1 bits (57), Expect = 0.48
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 231 QAAAPSQLRKRGRRQFPHEDIR*AQAHHRQTQPEVRNGPRFLQAGHEQVRRHAPPRVRED 410
           Q     Q +++ R+Q   +  +  Q  H+Q Q + +      Q   +Q R+  P R +  
Sbjct: 335 QRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQ----QQQQQQPRQSLPHRKQTQ 390

Query: 411 YE---RLQQNCQTQQESVHEGWERPR 479
            +   RLQQ  Q QQ+S  +  ++P+
Sbjct: 391 LQLSPRLQQQQQQQQQSQQQQQQQPQ 416



 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 357 QAGHEQVRRHAPPRVREDYERLQQNCQTQQE 449
           Q   +Q  R+ PP++R+  ++ Q+  Q QQ+
Sbjct: 255 QQQQQQGERYVPPQLRQQRQQQQRPRQQQQQ 285


>Y17703-1|CAA76823.1|  111|Anopheles gambiae D7r1 protein protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 391 HHEFVKTMNGFNKTAKHNKNLYMKGGSVR 477
           +H+ +K +N   K  KH+ NL   GG  +
Sbjct: 75  YHKLIKPLNAIEKDRKHDFNLEKCGGQTQ 103


>AY045760-1|AAK84942.1|  165|Anopheles gambiae D7-related 1 protein
           protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 391 HHEFVKTMNGFNKTAKHNKNLYMKGGSVR 477
           +H+ +K +N   K  KH+ NL   GG  +
Sbjct: 75  YHKLIKPLNAIEKDRKHDFNLEKCGGQTQ 103


>AJ133852-1|CAB39727.1|  165|Anopheles gambiae D7-related 1 protein
           protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 391 HHEFVKTMNGFNKTAKHNKNLYMKGGSVR 477
           +H+ +K +N   K  KH+ NL   GG  +
Sbjct: 75  YHKLIKPLNAIEKDRKHDFNLEKCGGQTQ 103


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +3

Query: 249 QLRKRGRRQFPHEDIR*AQAHHRQTQPEVRNGPRFLQAGHEQVRRHAPPRVREDYERLQQ 428
           Q +++ ++Q   +  R  Q   +Q Q + ++  R  Q   ++V++      R+  ++ QQ
Sbjct: 239 QQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQ-QQRVQQQNQQHQRQQQQQQQQ 297

Query: 429 NCQTQQESVHEGW 467
             Q QQ+   E W
Sbjct: 298 RQQQQQQEQQELW 310



 Score = 24.6 bits (51), Expect = 2.5
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +3

Query: 240 APSQLRKRGRRQFPHEDIR*AQAHHRQTQPEVRNGPRFLQAGHEQVRRHAPPRVREDYER 419
           A S   +RGR+    ++ R  Q  H+Q + + +      Q   +Q ++    + R     
Sbjct: 205 AHSSRNRRGRQGPQQQEQRQQQQQHQQREQQQQQ-----QQQQQQQQQQQQQQQRNQQRE 259

Query: 420 LQQNCQTQQESVHEGWERPR 479
            QQ  Q QQ    E  ++ R
Sbjct: 260 WQQQQQQQQHQQREQQQQQR 279



 Score = 23.4 bits (48), Expect = 5.9
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 300 AQAHHRQTQPEVRNGPRFLQAGHEQVRRHAPPRVREDYERLQQNCQTQQE 449
           AQ  H       R GP+  +   +Q +     + ++  ++ QQ  Q QQ+
Sbjct: 202 AQGAHSSRNRRGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQ 251



 Score = 23.4 bits (48), Expect = 5.9
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +3

Query: 210 QGRVECLQAAAPSQLRKRGRRQFPHEDIR*AQAHHRQTQPEVRNGPRFLQAG-----HEQ 374
           +GR    Q     Q ++  +R+   +  +  Q   +Q Q + RN  R  Q       H+Q
Sbjct: 212 RGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQ 271

Query: 375 VRRHAPPRVREDYERLQQNCQTQQE 449
             +    RV++  ++ Q+  Q QQ+
Sbjct: 272 REQQQQQRVQQQNQQHQRQQQQQQQ 296


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 399 VREDYERLQQNCQTQQESVHEGWERPRG 482
           ++EDY RL+   Q  +E     +++ RG
Sbjct: 174 LKEDYNRLKHEMQMAEEETQFTYQKKRG 201


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 345 PRFLQAGHEQVRRHAPPRVREDYER 419
           PR+LQ   ++++RH   R RE  +R
Sbjct: 700 PRYLQVSMDELKRHTQQR-REQLQR 723


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +1

Query: 376  YGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVTD 555
            Y D+    F + M GF+   K  K +Y              A ++L + +D    G V  
Sbjct: 1120 YDDVRKKRFTEFMRGFHIITKKLKEMYQM------ITLGGDAELELVDSMDPFNEGIVFS 1173

Query: 556  IKDQGEVWLML 588
            ++   + W M+
Sbjct: 1174 VRPPKKSWKMI 1184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,887
Number of Sequences: 2352
Number of extensions: 13063
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)