Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c13f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.25
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 1.00
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 28 1.3
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 1.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 5.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.0
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 9.3
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.3
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 243 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 356
TLP +T +T R + PPS SNR + + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.00
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 275 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 412
N+ S+ + Q + + IY PD Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 27.9 bits (59), Expect = 1.3
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Frame = +2
Query: 80 LKVTIPVVVCGGAVLAYYIMRR-KAATMVDAATLEKLEAGFSKLQGSDSKS--LLKKYLT 250
LK +P V GG +AY + T VDA K E ++ DSK+ L+ YL+
Sbjct: 21 LKAVVPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKE-----IEQLDSKTTYLMSLYLS 75
Query: 251 REVFDSLKNKKTSFGSTLLDCIQSG-VENLDSGVGIYAPDAESYSVFAE 394
E + + G + G N +SGV Y P +++ E
Sbjct: 76 PETTPEVIYEAAKKGIRGVKSYPKGATTNSESGVESYEPFYPTFAAMQE 124
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 283 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 155
LFV+ VEY PG L LR GS +T+ +FL CG+++C
Sbjct: 83 LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 273 RTKRPHSDPPSLTASNRVSRTWTPASVS 356
R RP +PP L+ASN T P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 407 IIEDYHNGFKKTDKHPPKNW 466
I++ ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 488 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 610
N+D A EF++ T S++G N C+ + YK DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 538 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 630
P+ VP P P VPV + GQ L PV P
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP 700
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 122 GPHRRRLQPESLLLAYNSS*KIAN 51
G R L+PE++LL YN + KI++
Sbjct: 132 GVAHRDLKPENILLDYNGNLKISD 155
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 452 PPKNWGDV 475
PPKNWGDV
Sbjct: 521 PPKNWGDV 528
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 190 LQFLEGCGVDHCCGFSPHDV 131
LQ LEG H CG S DV
Sbjct: 1226 LQLLEGLAYIHSCGVSHQDV 1245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,045
Number of Sequences: 5004
Number of extensions: 47896
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -