Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c13f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.   295   2e-82
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.   271   3e-75
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.27 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score =  295 bits (724), Expect = 2e-82
 Identities = 134/161 (83%), Positives = 149/161 (92%)
 Frame = +2

Query: 158 MVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENL 337
           MVD A L+KLE GFSKL  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENL
Sbjct: 1   MVDQAVLDKLETGFSKLSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENL 60

Query: 338 DSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVV 517
           DSGVGIYAPDAE+Y++FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+V
Sbjct: 61  DSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIV 120

Query: 518 STRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLEGE 640
           STRVRCGRSLEGYPFNPCLTE+QYKEME+KVS TLS LEGE
Sbjct: 121 STRVRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSGLEGE 161


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score =  271 bits (665), Expect = 3e-75
 Identities = 122/145 (84%), Positives = 136/145 (93%)
 Frame = +2

Query: 206 LQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSV 385
           L  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENLDSGVGIYAPDAE+Y++
Sbjct: 1   LSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60

Query: 386 FAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFN 565
           FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+VSTRVRCGRSLEGYPFN
Sbjct: 61  FADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFN 120

Query: 566 PCLTESQYKEMEDKVSGTLSSLEGE 640
           PCLTE+QYKEME+KVS TLS LEGE
Sbjct: 121 PCLTEAQYKEMEEKVSSTLSGLEGE 145


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -2

Query: 553 PLERAAAAHAGGDHELAGGVEVAER---VHVSPVLGRVLVGLLEAIVVVLDDRVKQLGEH 383
           P+++ A     GD  L G + V ER   +   PV+ +  V  LEA++  LD    Q    
Sbjct: 106 PVKKEAVVE--GDLVLGGLMMVHERQDRLTCGPVMPQGGVQALEAMLYTLDKLNTQDIVP 163

Query: 382 GVRLGVRRV-DTDAGVQVLDTRLDAVK 305
           GVR+G   + D D     L+  +D +K
Sbjct: 164 GVRIGAHILDDCDNDTYGLEMSVDFIK 190


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 GSIRQPEEQKDLIRIHPP 306
           GS  QP+EQ+ L  + PP
Sbjct: 33  GSAEQPKEQEPLPPVTPP 50


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 321 RVSRTWTPASVSTRRTPSRTP 383
           +V   W P  +  RRTP  TP
Sbjct: 352 QVFLNWMPRLLMMRRTPYSTP 372


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 134 CNKLGPHRRRLQPESLLLA 78
           C+  G   R L+PE+LLLA
Sbjct: 25  CHHNGVVHRDLKPENLLLA 43


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 409 HRGLPQWLQEDRQAPAQEL 465
           H G   W QED  A  + L
Sbjct: 405 HHGSKSWTQEDMDAALEAL 423


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 342 PASVSTRRTPSRTPCSPS 395
           P  V  R TP+ T C P+
Sbjct: 199 PILVRARETPNYTACPPT 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,643
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)