Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c12r
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3CKD9 Cluster: Endoglucanase, putative; n=2; Streptoco...    34   3.8  
UniRef50_Q1LSU9 Cluster: Outer membrane protein, OMP85 family; n...    33   8.7  

>UniRef50_A3CKD9 Cluster: Endoglucanase, putative; n=2;
           Streptococcus|Rep: Endoglucanase, putative -
           Streptococcus sanguinis (strain SK36)
          Length = 342

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 497 NFILSNKALF*VYLLNGKVVIFFYDAGYFTSSIYYSCAPNLMAPKVEDQNVY 342
           NF LS + ++  Y L GK  +    AG FT+ ++Y+   N+   K+  QN Y
Sbjct: 267 NFFLSQEKIYAGYTLKGKA-LNSNQAGSFTAPVFYAANNNMEFRKLVQQNKY 317


>UniRef50_Q1LSU9 Cluster: Outer membrane protein, OMP85 family; n=1;
           Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)|Rep: Outer membrane protein, OMP85 family -
           Baumannia cicadellinicola subsp. Homalodisca coagulata
          Length = 793

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 560 LSHVDYTYSNYSKFRKLKYSFGTNLKHRKKIGNQYSISLN*LH 688
           L+ ++  Y+NY K++++ Y F T L     I    SI ++ +H
Sbjct: 488 LNSLNSNYTNYFKYKRISYGFNTTLSFPINIHQNLSIGIDYIH 530


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,386,289
Number of Sequences: 1657284
Number of extensions: 9945705
Number of successful extensions: 19367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19359
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)