Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c12r
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    28   1.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.9  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 39  FI*VISIYSGYILIVSISSVKCPRILLFSTALVDLITFHISFCTLPVN 182
           +I +  I+S ++L +      C  +L  STAL  +I  +  FC   ++
Sbjct: 647 YILICLIFSQFMLAMGNRPRSCRVLLFISTALFSIIMIYFVFCVFYIS 694


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 527  CTLHDKFQQH*LSHVDYTYSNYSKFRKLKYSFGTNLKHR--KKIGNQYS 667
            C L+  F +  L  +D+  +NY       + FG  LK+R  + I  +YS
Sbjct: 2050 CQLNSNFFEKILVDMDFNDNNYRTVANTLFVFGVILKNRGMEYIQREYS 2098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,347
Number of Sequences: 5004
Number of extensions: 48313
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)