Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c12r
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 520 SISLFFRQTLFLVIKLCFRFTC*MVKL*YFSMMPD 416
           S+S+F  Q++FL+I LCF   C  V L    ++PD
Sbjct: 189 SLSMF--QSIFLLIALCFTIICSSVSLYKLIILPD 221


>Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical
           protein T13F3.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 28  HSTILFKSFQSIVDTY*SSVFPVSNALVSYYSVQLWLT*LHFIFHFVLCLLIR 186
           H+ + +K    I+DT   S+FP+S      ++V   ++ LH I   +L + IR
Sbjct: 128 HTLVFYKPSTKIIDTVFRSIFPISTT----FAVGCSVSALHSIVTNILKICIR 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,639
Number of Sequences: 27780
Number of extensions: 263317
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)