Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11r
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.88 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.2  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 78  PSVCPAPRCSCTED 119
           P+VC  P C C+ED
Sbjct: 165 PAVCVLPDCFCSED 178


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 555 NSLILDLSFNN-TCLSAPCLLPVEIVKLLLERG 460
           N  +LDLSFNN T ++     PVE+  + L  G
Sbjct: 224 NIKVLDLSFNNITSVAKQFFRPVELSLMQLYLG 256


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 379 RRGRHRAHVHILHNTPGR 326
           +RGR     HIL  TPGR
Sbjct: 278 QRGRILGGCHILVATPGR 295


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 269 GTAIST*RIERLLESFSIHLETSLRP 192
           G+ +    I  +L+SFS+  +  +RP
Sbjct: 33  GSVLGDVNISAILDSFSVSYDKRVRP 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,747
Number of Sequences: 336
Number of extensions: 3833
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)