Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11r
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    27   3.0  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   3.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.2  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 282 DELLRDSHF---NITNRTSIRVVFDSSRDFVETLRGTDSSRKKTTDKVNEEY 136
           DEL +  H     I + T +R  FD ++ ++ + R T +  K++  K   EY
Sbjct: 74  DELAKLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKESLQKDEAEY 125


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 405 HLANNELTTDEDVTEPTSTFYIIRQADPLDGGASSLTAINKDELLR 268
           H ANNE      + E  + FY     +P+D   + L +I K EL R
Sbjct: 450 HPANNESLVKSKLEE--AVFYSFLPGNPIDFSCNYLRSIKKPELER 493


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 396 NNELTTDEDVTEPTSTFYIIRQADPLDGGASSLTAINKDELLR--DSHFNITN 244
           N+E    +DV   T++F I  ++ P  G  S    + +D LL   D  FN  N
Sbjct: 550 NDEHADCDDVNFSTASFEIYERSIPTHGADSERKILKRDSLLNEDDEIFNDLN 602


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 165 KTTDKVNEEYTNRCVGPQCRNNAVQDKQKALDFYKFIYSQLRQPRANDKKKK 10
           K   KV E  + R +  +   N   DK K+    K   S L +P+AN K+K+
Sbjct: 18  KKNSKVVENSSARSLKNKTEENKTIDKHKSSVGPKEPKSSLEKPKANRKRKQ 69


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 501 LLPVEIVKLLLERGMCDINLDPQIMCLLYGDRHL 400
           LL   +  +L   G  DI  +  ++C++ GD++L
Sbjct: 693 LLKTNVSCVLANHGYNDIKFEEMVLCVIKGDQNL 726


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 525  NTCLSAPCLLPVEIVKLLLERGMCDINLDPQIMCLLYGDRHLANN 391
            N C S  CL PV+IV   ++ G    + +P I+ L+  D +++ N
Sbjct: 968  NLCYST-CLGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPN 1011


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 183 TDSSRKKTTDKVNEEYTNRCVGPQCRNNAVQDKQKALD 70
           T+    KT  KVNE++TN          ++Q+K+ +L+
Sbjct: 18  TEEDLSKTRAKVNEKFTNIVRERMLEELSLQNKEASLE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,780
Number of Sequences: 5004
Number of extensions: 61902
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)