Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11r
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0040 + 27891797-27891823,27891934-27892091,27892169-278924...    33   0.25 
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400...    30   1.8  
04_04_1369 - 32982354-32983024,32983386-32983959                       30   2.3  
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216...    29   3.1  
06_02_0220 - 13205700-13205863,13205977-13206046                       29   5.4  
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348...    28   7.1  

>11_08_0040 +
           27891797-27891823,27891934-27892091,27892169-27892463,
           27892548-27892607,27892686-27893036
          Length = 296

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
 Frame = -2

Query: 735 RNTGRRGFTF-ALNTVENVEPHSLVFDYASCKTAGASVTYENNKIDCR-CRDIDFLDAPT 562
           RN G + F F ++ T++ V+  ++ + Y SC      V  +N+K  CR C    + +  T
Sbjct: 4   RNPGSQEFVFTSIVTIDRVQ-ENIQWWYMSCNLCNKIVIQKNDKYHCRNCN--KYPENTT 60

Query: 561 ELNSLILDLSFNNTCLSAPCLLPVEIVKLLLERGMCD-INL-------DPQIMCLLYGDR 406
               L L +S + T  S  C +  ++ + +LE  +   +NL        P I+  L G +
Sbjct: 61  PRYRLRLQISDHTT--STSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQ 118

Query: 405 HLANNELTTDEDVTEPTSTFYIIRQADPLDGGASSLTAINK--DELLRDSHFNI 250
            +   +L +++++TE T   Y++++    D        INK  +EL+ D   NI
Sbjct: 119 LIFKFKL-SEQNLTEGTPN-YVVKKTFVPDYMLEKQYLINKAEEELMDDDVDNI 170


>02_02_0474 +
           10738476-10738797,10739568-10739677,10739891-10740094,
           10740400-10740576,10740659-10740811,10741535-10741624,
           10741939-10742049,10742169-10742285,10742881-10743032,
           10743116-10743200,10743597-10743691,10744211-10744376,
           10744459-10744654,10745662-10745795
          Length = 703

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 227 SFSIHLETSLRPCEARIRLVKKPQTKSTRNTRTDVSVLSAGTTRCRTNRRRL 72
           S ++ ++ +     AR RL  KPQ ++ R   + VSV++AG +R R+ R  L
Sbjct: 40  SAAMQMQAATTTTAAR-RLAPKPQPQANRCRPSSVSVVAAGRSRRRSARSSL 90


>04_04_1369 - 32982354-32983024,32983386-32983959
          Length = 414

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -2

Query: 546 ILDLSFNNTCLSAPCLLPVEIVKLLLERGMCDINLDPQIMCLLYGDRHLANNELTTDEDV 367
           +LD+ F+N  L  PCL   E  + L +  +    +D Q    +       +  ++T ED 
Sbjct: 254 LLDIKFSNGVLEVPCLTIDENTESLFKNLIAFEQMDSQYENYITAYIAFMSQLVSTSEDA 313

Query: 366 TEPTSTFYIIRQADPLDGGASSLTAIN 286
           T  T    I+   D  D  ++  T ++
Sbjct: 314 TLLTERGIIVHMLDNDDEVSAMFTRLS 340


>08_02_1152 +
           24720397-24720636,24720739-24720951,24721617-24721697,
           24721781-24721867,24721970-24722065,24722179-24722232,
           24722326-24723375,24723468-24723507,24723551-24723756
          Length = 688

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 333 QADPLDGGASSLTA--INKDELLRDSHFNITNRTSIRVVFDSSRDFVETLRGTDSSRKKT 160
           + DP D G S      +NK E+  +   N   + S     DSS   +    GTD S + T
Sbjct: 447 EPDPDDNGTSKFIPEPVNKMEVETELGSNFAVQNSEPDPDDSSNAILNKKLGTDRSDETT 506

Query: 159 TDKVNEEYTNR 127
            + V EE  N+
Sbjct: 507 CEAVVEECVNK 517


>06_02_0220 - 13205700-13205863,13205977-13206046
          Length = 77

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 45  ADYK*ICKNQAPSVCPAPRCSCTEDRHICSC 137
           AD K  C     S C    C    DRH C C
Sbjct: 45  ADQKDACNTWCQSQCRGGECKPRGDRHFCHC 75


>01_06_1626 -
           38734128-38734160,38734386-38734560,38734819-38734878,
           38734961-38735059,38735191-38735224,38735315-38735374,
           38735596-38735696,38735949-38736014,38736695-38736825,
           38736946-38737038,38737273-38737338,38737459-38737494,
           38738308-38738382,38738475-38738792
          Length = 448

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 562 SWSIQEVYVAASAIDFVVFIRNRGAGCLATSVIEDQRMWFNVFY 693
           S+S  E Y  + A+D V +  NRG   +A   +    + + V Y
Sbjct: 223 SYSFSERYTTSDAVDIVRYAENRGVNVMAEIDVPGHALSWGVGY 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,967,155
Number of Sequences: 37544
Number of extensions: 412468
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)