Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11r
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    29   2.8  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.14 protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 309 ASSLTAINKDELLRDSHFNITNRTSIRVVFDSSRDFVETLRGTDSSRKKTTDKVNEEYTN 130
           AS LT+I+   +  +S F +TN    R          E  + TD  RK  +  V EE++ 
Sbjct: 170 ASQLTSISLLRIELESSFGLTNAWYARFASTYKTFHTELDKMTDMMRKSKSSDVQEEFSK 229

Query: 129 R 127
           R
Sbjct: 230 R 230


>Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical
           protein C50F4.2 protein.
          Length = 756

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 687 NVEPHSLVFDYASCKTAGASVTYENNKIDCRCRDIDFLDAPTELNSLILDLS 532
           N++ + L       +TA   +   ++ + CR R   FLD  T LN + + LS
Sbjct: 345 NIQRNELSRVIRQTETANEEIMQRHSDLACRLRGFGFLDKQTYLNFVSIPLS 396


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -2

Query: 243 RTSIRVVFDSSRDFVETLRGTDSSRKKTTDKVNEEYT-NRCVGPQCRNNAVQDKQKALDF 67
           R   +   D S     T+     +R+  ++  N  Y  NR    +CR NAV DK+     
Sbjct: 86  RQKSKKALDESMKEHSTMEDLSRAREALSEMGNMYYELNRAAALKCRYNAVFDKR---PL 142

Query: 66  YKFIYSQLRQPRANDK 19
           YK + S ++  R  D+
Sbjct: 143 YKAVESSIQDLRQKDE 158


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 147 NEEYTNRCVGPQCRNN 100
           N EY N C  PQC+NN
Sbjct: 98  NCEYDNFCANPQCQNN 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,152
Number of Sequences: 27780
Number of extensions: 367154
Number of successful extensions: 1230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)