Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11r
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 683 LNHIRWSSITLVARQPAPLLRMKTTKSIA 597
           +NHIRW+S   +A      L +  T ++A
Sbjct: 506 INHIRWNSAFAIAPAVISCLGIVATMAVA 534



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 92  CTALFLH*GPTHLFVYSSLTLSVVFLRDESVPRKVS 199
           C A+ L    T + +YS     ++F  D+++ RKV+
Sbjct: 741 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVT 776


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 683 LNHIRWSSITLVARQPAPLLRMKTTKSIA 597
           +NHIRW+S   +A      L +  T ++A
Sbjct: 596 INHIRWNSAFAIAPAVISCLGIVATMAVA 624



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 92  CTALFLH*GPTHLFVYSSLTLSVVFLRDESVPRKVS 199
           C A+ L    T + +YS     ++F  D+++ RKV+
Sbjct: 831 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVT 866


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 657 YASCKTAGASVTYENNKID 601
           YASCK   A+V ++ + +D
Sbjct: 138 YASCKLQAAAVDHQGSVLD 156


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 379 RRGRHRAHVHILHNTPGR 326
           +RG+  A  HIL  TPGR
Sbjct: 316 QRGKLSAGCHILVATPGR 333


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 160 HRQSQRGIHEQMCRSSVQ 107
           H+QS  G+H     SSVQ
Sbjct: 806 HQQSHHGLHINSSPSSVQ 823


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 663 FDYASCKTAGASVTYENNKIDCRCRD 586
           FD  +C     S TY+  K+D R  D
Sbjct: 162 FDEQTCVLKFGSWTYDGFKVDLRHMD 187


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 269 GTAIST*RIERLLESFSIHLETSLRP 192
           G+ ++   I  +L+SFS+  +  +RP
Sbjct: 4   GSMLNDVNISAILDSFSVSYDKRVRP 29


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 269 GTAIST*RIERLLESFSIHLETSLRP 192
           G+ ++   I  +L+SFS+  +  +RP
Sbjct: 4   GSMLNDVNISAILDSFSVSYDKRVRP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,629
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)