Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11f
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    31   0.008
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    31   0.008
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    31   0.008
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.70 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   3.7  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 301 QKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVK 480
           +K   L K   K+      + LS  S    PP   I  +   V  P     SPTTA  + 
Sbjct: 201 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAI- 259

Query: 481 CSGTASLKSIS 513
            S T +++++S
Sbjct: 260 ASATVTIQNVS 270


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 301 QKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVK 480
           +K   L K   K+      + LS  S    PP   I  +   V  P     SPTTA  + 
Sbjct: 149 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAI- 207

Query: 481 CSGTASLKSIS 513
            S T +++++S
Sbjct: 208 ASATVTIQNVS 218


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 301 QKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVK 480
           +K   L K   K+      + LS  S    PP   I  +   V  P     SPTTA  + 
Sbjct: 332 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATAI- 390

Query: 481 CSGTASLKSIS 513
            S T +++++S
Sbjct: 391 ASATVTIQNVS 401


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 343 DKLQFISLSNNSPVQTPP---EVTIENVKEVVSLP 438
           + + ++S+ NN+P   PP   E   E V+ V  +P
Sbjct: 719 ESISYLSMENNAPPPPPPPRVESFAETVRTVSKIP 753


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 508 ISVVDSYIKSINTRAIYNVTGVSSVEFVNVTIGEIQNQGIE 630
           I V+ S +KSI  +      G+  +EF   T    +  GI+
Sbjct: 226 IVVILSKVKSILNKKCCEKCGLKKIEFCRPTFSAARFYGID 266


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 283 LDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPPE 399
           +  P  ++   L  F+V     LQ  S +++SP    PE
Sbjct: 260 VSAPFFRQPLDLYNFRVPQHQVLQSPSSTSSSPEPRSPE 298


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 139 QRFGNS*SLF*HLRNLSGER 80
           +RF  S S+  H+R  SGER
Sbjct: 57  RRFSQSSSVTTHMRTHSGER 76


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 139 QRFGNS*SLF*HLRNLSGER 80
           +RF  S S+  H+R  SGER
Sbjct: 313 RRFSQSSSVTTHMRTHSGER 332


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 448 RTSLVKTPLPSRSLW*LPAASEPGSC 371
           R  LV   L + ++W +  A  PG C
Sbjct: 604 RDRLVARGLGAEAMWPVWCAQNPGMC 629


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 553 WPLCLLILYS 524
           WP+ ++ILYS
Sbjct: 214 WPIIMIILYS 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,000
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)