Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11f
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.75 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.0  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   5.3  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.0  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   9.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.3  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 306 LL*YRAVEDHFDVLTILHG*TFYIIRVKVL*MYYEVITFDISTTVNNVLC 157
           LL YR  ED   +LTI+   T +I R   +        F+I++ +N   C
Sbjct: 750 LLCYRRAEDDSRILTIIESWTIFISRFSSVISRCSFTDFEINSILNFFFC 799


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 370 NNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVK 480
           N+S  +   +V  ENV+    +PRK  R P   N++K
Sbjct: 306 NDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = -2

Query: 476 TSLAVVGDLKNFLGKDTTSFTFSMVTSGGV*TGELFDREMNWSLSQSFTLNF*SEDAFCN 297
           TSL ++  +++    +   +T S++   GV       +   W LS +F +   + D F +
Sbjct: 324 TSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRS 383

Query: 296 -----IGQSRTTLTSLQFCTVKLFISSV*KSFRCIMKS 198
                +G     L SL+  +++LF     K    ++K+
Sbjct: 384 GAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKN 421


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +1

Query: 331 VKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSI 510
           +KD +K   +  SNN  + TP +     VK + S    F +S    N      T+  K +
Sbjct: 444 IKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDKGL 503

Query: 511 SVVDSYIKSINT 546
           S   S     NT
Sbjct: 504 STDASSGAKSNT 515


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = +3

Query: 423 SGVFTKEVLQITDHC*R-------SEMLRYRLPEKYKCRR*LYKIN 539
           + V+T  +L ++DHC           MLRY + ++ +  + L K+N
Sbjct: 219 AAVYTSRILALSDHCKNHKKDQTGKRMLRYYVHQRQRMLKYLRKVN 264


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 328 KVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPR 441
           K K C     ++ S+ SP+  P    ++   + VSLP+
Sbjct: 149 KTKSCSIPPILNSSDRSPLSLPTPYPVQYSTQPVSLPQ 186


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +1

Query: 301 QKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANE-- 474
           Q+ S+L+K   K   +L  + L    PV + P     N K  +S P  FF+ P  +NE  
Sbjct: 256 QENSALRKLLCKCYTRLGIVLL----PVNSSP-----NWKYSISNPDSFFQLPDDSNEEV 306

Query: 475 ---VKCSGTASLKSISVVDSYIK 534
              ++      L S+S +DS+++
Sbjct: 307 HIYLEVIVDFLLSSVSDIDSFVR 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,664
Number of Sequences: 5004
Number of extensions: 49755
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)