Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c11f
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0513 + 24466131-24469487 33 0.19
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 33 0.25
12_02_0346 - 17776871-17781445 31 0.59
12_02_0343 - 17748882-17753396 30 1.4
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 30 1.8
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 2.4
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 3.1
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 4.1
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 29 4.1
11_06_0110 + 20212221-20214011,20214072-20214368 28 5.5
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 28 5.5
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 28 5.5
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 28 5.5
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 28 5.5
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 7.2
12_01_1035 + 10656345-10656347,10656694-10656864,10656922-106577... 27 9.6
07_03_0382 + 17470508-17470807,17471449-17474517 27 9.6
04_04_1191 + 31599067-31600194 27 9.6
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178 27 9.6
02_01_0330 + 2325504-2325739,2326749-2327622 27 9.6
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQ 354
+KSL++ C+++ +C L S+L++ K+ CD+L+
Sbjct: 1020 LKSLSISLCEELSASSNCEGLTMLSNLEELKISGCDELE 1058
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 253 VQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQT 390
+Q DVK VL CP+ +K +L VK C L S QT
Sbjct: 2828 IQQAADVKRVLTCPLTRKGQALNHENVKHCGMLVLSSCYVERSTQT 2873
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 31.5 bits (68), Expect = 0.59
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPPE-VTIEN 414
IK + C+++ LD +Q SLQ + DC KL S S+ SP T + + + N
Sbjct: 1194 IKVFEISECRELS--LDSGGIQGLLSLQTLGIYDCPKLLCSSSSSYSPFPTSLQTLQLWN 1251
Query: 415 VKEVVSLP 438
V+ + +LP
Sbjct: 1252 VEGMETLP 1259
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPPE-VTIEN 414
IK + C+++ LD +Q SLQ + DC KL S S+ SP T + + +
Sbjct: 1195 IKVFEISECRELS--LDSGGIQGLLSLQTLGIYDCPKLLCSSSSSYSPFPTSLQTLDLSK 1252
Query: 415 VKEVVSLP 438
V+ + +LP
Sbjct: 1253 VEGMETLP 1260
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 265 KDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSP-VQTPPEVTIENVKEVVSLPR 441
K+VK+ Q S K +L + L+N S + P+ +IENVK + +
Sbjct: 67 KNVKLDGFASTFQNQPSFNKMIETQLAQLASLVLANQSGRIPGQPDSSIENVKAITTRRG 126
Query: 442 KFFRSPTTANEVKCSGTASLKSISVVDSYIKSI 540
K R P N V +G K + DS K I
Sbjct: 127 KSTRDPPYPNPVGTNGVT--KEVPSNDSADKEI 157
>02_04_0206 +
20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 168 NVLCCETRPASVLATREVYSNTFGTYQESVH 76
NV+C +T P L E+ +NT G + S+H
Sbjct: 380 NVICSKTDPNHQLEKDELLTNTRGEFSSSIH 410
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 397 EVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSISVVDSYIKSINTR 549
EV +KE+ L + + + N ++ G SI +D IKS+N R
Sbjct: 141 EVVSGKLKEIEPLQKSLGKFRSENNAMRAQGAGLCSSIEELDQLIKSLNDR 191
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 129 PKRWLVLFRNKGHC 170
P RWL + RN GHC
Sbjct: 1182 PSRWLAVLRNMGHC 1195
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 397 EVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSI 510
E+++EN K +S+P PT AN V +SL S+
Sbjct: 440 ELSVENFKAAMSIPAALGLDPTVANSVHQVINSSLGSV 477
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 353 WSLSQSFTLNF*SEDAFCNIGQSRTTLTSLQFCTVKLFISSV*KSFRCIMKSLLLTLAQL 174
WSL+ LN S + I Q+ + SLQ +S K CIMK+ L L L
Sbjct: 273 WSLTSLKYLNLSSTSLYGEIPQALGNMLSLQVLDFSYNMSVSKKGNMCIMKANLKNLCNL 332
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 268 DVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSP 381
D VV+ I ++S L+KF VK ++ ISL SP
Sbjct: 204 DCSVVMKTNIASRSSLLRKFLVKLAQRVALISLPPRSP 241
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPP 396
++ L + NC D++ + L+ +SL+ KV+ C KL + +S V + P
Sbjct: 1182 LRDLFISNCPDLEFGGEEGALRGYTSLESIKVQSCPKLIPLLVSGKMEVGSLP 1234
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 154 ATKDIVYSCANVKSNDFIIHLKDFYTD---DIKSLTVQNCKDVKVVLDCPILQKASSLQK 324
A ++ + + ++ + LK+F D D+K L + N + +++ + + QK
Sbjct: 139 AIVSVLLNSPGITLSEELKKLKEFAKDLPPDLKGLAIVNSESIRLASNSFARPEVPEEQK 198
Query: 325 FKVKDCDKLQFIS 363
VKD D FIS
Sbjct: 199 SSVKDDDVYHFIS 211
>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENV 417
++ L ++ CK ++ + + + + SL+KF + DC KL F+ S + + E+ ++
Sbjct: 1394 LRELLLRGCKGLETLPEG--MGRLISLEKFIIMDCPKLTFLPESMKN-LTALIELHLDGC 1450
Query: 418 KEVVSLP 438
K + +LP
Sbjct: 1451 KGLETLP 1457
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 235 DIKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKL 351
+++ L +QNCK V V I + SLQ V C KL
Sbjct: 107 NLRVLALQNCKGVTDVGMAKIGDRLPSLQSIDVSHCRKL 145
>12_01_1035 +
10656345-10656347,10656694-10656864,10656922-10657728,
10657881-10659092
Length = 730
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 394 PEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSISVVDSYIKSINTR 549
P+ +IENVK + + K R P N + +G + K DS IK + +
Sbjct: 357 PDSSIENVKAITTRGGKSTRDPPYPNPARTNGIS--KEAPSSDSAIKEVQPK 406
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFIS 363
+K L VQ C ++K+V + P+L+ + + ++ D + ++S
Sbjct: 900 LKELNVQACNELKIVSNLPLLEVLTIRRCPRLDDVSGVHYLS 941
>04_04_1191 + 31599067-31600194
Length = 375
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 238 IKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKLQFISLSNNSPVQTPP 396
++ L + NC D++ + L+ +SL+ KV+ C KL + +S V P
Sbjct: 49 LRELVISNCPDLEFGGEEGALRGYTSLKSIKVQGCPKLIPLLVSGKMEVGLLP 101
>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
Length = 1122
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 232 DDIKSLTVQNCKDVKVVLDCPILQKASSLQKFKVKDCDKL 351
DD SL + KD + P + +SSL K +KDC KL
Sbjct: 891 DDFPSLRLLKIKDSHELRYLP-QELSSSLTKLVIKDCSKL 929
>02_01_0330 + 2325504-2325739,2326749-2327622
Length = 369
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 370 NNSPVQTPPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSISVVDSYIK 534
++SP P + V + V+ R++ RSP+ + C SL ++K
Sbjct: 43 DSSPKSATPTAALNLVADAVAAWRRWLRSPSASPTASCRDDRSLDIWYTAKEFVK 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,674
Number of Sequences: 37544
Number of extensions: 305219
Number of successful extensions: 788
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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