Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c11f
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 31 0.80
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 29 3.2
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06) 28 5.6
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 28 5.6
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 27 9.8
SB_25889| Best HMM Match : TIMP (HMM E-Value=0.023) 27 9.8
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 319 QKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFF-RSP-TTANEVKCSGT 492
+K V + I+ +NNS +T P+ +EN K+ KFF RS T +E G
Sbjct: 1723 EKMSVSSARVTKSITQTNNSVKETVPKTIVENEKQQEGFFTKFFIRSEYHTESEKNVPGQ 1782
Query: 493 ASLKSIS 513
K IS
Sbjct: 1783 TKAKDIS 1789
>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 382 VQTPPEVTIE-NVKEVVSLPRKFFRSPTTANEVKCSGTASL 501
V TPP T+E NV++ PRK R+ EV SG + L
Sbjct: 573 VITPPRPTVELNVRDRTKRPRKTARNLAKLTEVGASGQSGL 613
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +1
Query: 91 ISSEGVRINFTSCQNAGW---SCFATKDIVYSCANVKSNDFIIHLKD 222
+ G + C + GW SC + D+V C+N D + L D
Sbjct: 749 VKCRGNESSLADCPHDGWGVHSCNHSNDVVLFCSNTSGPDIEVRLSD 795
>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 337 DCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFR--SPTTANEVK 480
+ D + + ++P PP V +VKE V PR++ PTTA K
Sbjct: 36 NADFRKLLMTPRSAPSAAPPSVKPASVKETVGKPRQYNEDDDPTTARRKK 85
>SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)
Length = 313
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 79 YALLISSEGVRINFTSCQNAGWSCFATKDIVYSCA 183
Y L +S + V ++ T C+N G +C AT +Y+CA
Sbjct: 84 YVLPLSHD-VCLSLTPCRNGG-TCHATGGFLYTCA 116
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 448 FRSPTTANEVKCSGTASLKSISVVDSYIKSINTRAI-YNVTG 570
F + T+ VK +GTA KSI+ +Y+KS N +++ N +G
Sbjct: 1706 FFNYTSEQGVKFNGTAMGKSINTAFAYLKSENEKSLRVNASG 1747
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 633 GLYTLILNLTDSH--IHELNATDSG--YVVNGPCVY*FYIAIDDTYTFQGGGTGAFHFVS 466
G +T++ ++TD + + N +S YV N P + F I T + GGT F+ +
Sbjct: 118 GRFTVVRDITDCYDPYNCYNYMESRLKYVENTPYLPTFIIQTPKDVTIRQGGTAVFNCKA 177
Query: 465 SGR*SEELPW 436
G + + W
Sbjct: 178 RGHPAPHIAW 187
>SB_25889| Best HMM Match : TIMP (HMM E-Value=0.023)
Length = 314
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 379 PVQTPPEV---TIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSISVVDSYIK 534
PV PE + NVK + +L R+ F+ A++V C G + +++ +IK
Sbjct: 93 PVAKQPEEGNPLVHNVKRLRALRRQRFQRSGVASQVGCRGWSVMRATVKAGKFIK 147
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 310 SSLQKFKVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVVSLPRKFFRSP 459
S+L V D+ + L+NN+ V T T N VV P KFF+SP
Sbjct: 1578 STLTIINVHRHDEAYYKCLANNT-VDTTTSTT--NTSVVVQYPPKFFQSP 1624
>SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 282 PRLPYITEGIFASKVQSKRLRQTPI-HLPIEQLPGSDAAG 398
PRL Y+T+ + S KR R TP P QLP G
Sbjct: 598 PRLRYLTKRLVKSCKGCKRFRATPFPKTPAGQLPRDRTVG 637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,963
Number of Sequences: 59808
Number of extensions: 364771
Number of successful extensions: 1069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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