Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c11f
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical p...    30   1.2  
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC087232-5|ABA00173.1|  271|Caenorhabditis elegans Hypothetical ...    29   2.1  

>AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.3a protein.
          Length = 637

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 391 PPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSIS----VVDSYIK-SINTRAI 555
           PP+ T + + + +SLP  +  S +  + +K S +  ++S S    V++   +  +  + I
Sbjct: 30  PPKTTPKTLSDKISLPESYKISGSMTDWMKASTSLLVESASKEFRVLEKQTRDQMPEKWI 89

Query: 556 YNVTGVSSVEFVNVTIGE 609
             +TG     F+NVT GE
Sbjct: 90  QELTGAKLTSFINVTSGE 107


>Z82264-12|CAB05161.2|  300|Caenorhabditis elegans Hypothetical
           protein C49C3.8 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +1

Query: 328 KVKDCDKLQFISLSNNSPVQTPPEVTIENVKEVV-----SLPRKFFRSPTTANEVKCSGT 492
           K+K+C K  FIS S+ S V  P    + ++KE++     +  +K      T+NE   +  
Sbjct: 168 KIKECSKRAFISNSDQSEV--PSTSMLNSMKEMITEAVETSNKKLIEELKTSNEALVAQV 225

Query: 493 ASLKSISVVDS 525
           A+ KS  +  S
Sbjct: 226 ANFKSKHIEQS 236


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +1

Query: 397 EVTIENVKEVVSLPRKFF----RSPTTAN----EVKCSGTASLKSISVVDSYIKSINT 546
           E  IE VKEVV+ PR+F+    RS   +N     ++C G   L S   + S +  + T
Sbjct: 23  ETCIERVKEVVAAPRRFWFGEQRSALCSNRNAKSLECGGPPQLASFHSIASRLFRVKT 80


>AC087232-5|ABA00173.1|  271|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.3b protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 391 PPEVTIENVKEVVSLPRKFFRSPTTANEVKCSGTASLKSIS----VVDSYIK-SINTRAI 555
           PP+ T + + + +SLP  +  S +  + +K S +  ++S S    V++   +  +  + I
Sbjct: 30  PPKTTPKTLSDKISLPESYKISGSMTDWMKASTSLLVESASKEFRVLEKQTRDQMPEKWI 89

Query: 556 YNVTGVSSVEFVNV--TIGEIQNQGIEAI 636
             +TG     F+NV  T+ ++   G+  +
Sbjct: 90  QELTGAKLTSFINVTKTLSDLSQVGLNGL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,034
Number of Sequences: 27780
Number of extensions: 274253
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)